otbStreamingStatisticsVectorImageFilter.h

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/*
 * Copyright (C) 1999-2011 Insight Software Consortium
 * Copyright (C) 2005-2022 Centre National d'Etudes Spatiales (CNES)
 *
 * This file is part of Orfeo Toolbox
 *
 *     https://www.orfeo-toolbox.org/
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
 
#ifndef otbStreamingStatisticsVectorImageFilter_h
#define otbStreamingStatisticsVectorImageFilter_h
 
#include "otbPersistentImageFilter.h"
#include "otbPersistentFilterStreamingDecorator.h"
#include "itkSimpleDataObjectDecorator.h"
#include "itkImageRegionSplitter.h"
#include "itkVariableSizeMatrix.h"
#include "itkVariableLengthVector.h"
 
namespace otb
{
 
template <class TInputImage, class TPrecision>
class ITK_EXPORT PersistentStreamingStatisticsVectorImageFilter : public PersistentImageFilter<TInputImage, TInputImage>
{
public:
  typedef PersistentStreamingStatisticsVectorImageFilter Self;
  typedef PersistentImageFilter<TInputImage, TInputImage> Superclass;
  typedef itk::SmartPointer<Self>       Pointer;
  typedef itk::SmartPointer<const Self> ConstPointer;
 
  itkNewMacro(Self);
 
  itkTypeMacro(PersistentStreamingStatisticsVectorImageFilter, PersistentImageFilter);
 
  typedef TInputImage                           ImageType;
  typedef typename ImageType::Pointer           InputImagePointer;
  typedef typename ImageType::RegionType        RegionType;
  typedef typename ImageType::SizeType          SizeType;
  typedef typename ImageType::IndexType         IndexType;
  typedef typename ImageType::PixelType         PixelType;
  typedef typename ImageType::InternalPixelType InternalPixelType;
 
  typedef TPrecision    PrecisionType;
  typedef PrecisionType RealType;
 
  itkStaticConstMacro(ImageDimension, unsigned int, TInputImage::ImageDimension);
 
  typedef typename itk::DataObject::Pointer                  DataObjectPointer;
  typedef itk::ProcessObject::DataObjectPointerArraySizeType DataObjectPointerArraySizeType;
 
  typedef itk::VariableSizeMatrix<PrecisionType>   MatrixType;
  typedef itk::VariableLengthVector<PrecisionType> RealPixelType;
  typedef itk::VariableLengthVector<unsigned long> CountType;
 
  typedef itk::SimpleDataObjectDecorator<RealType>      RealObjectType;
  typedef itk::SimpleDataObjectDecorator<IndexType>     IndexObjectType;
  typedef itk::SimpleDataObjectDecorator<PixelType>     PixelObjectType;
  typedef itk::SimpleDataObjectDecorator<RealPixelType> RealPixelObjectType;
  typedef itk::SimpleDataObjectDecorator<MatrixType>    MatrixObjectType;
  typedef itk::SimpleDataObjectDecorator<CountType>     CountObjectType;
 
  CountType GetNbRelevantPixels() const
  {
    return this->GetNbRelevantPixelsOutput()->Get();
  }
  CountObjectType*       GetNbRelevantPixelsOutput();
  const CountObjectType* GetNbRelevantPixelsOutput() const;
 
  PixelType GetMinimum() const
  {
    return this->GetMinOutput()->Get();
  }
  PixelObjectType*       GetMinimumOutput();
  const PixelObjectType* GetMinimumOutput() const;
 
  PixelType GetMaximum() const
  {
    return this->GetMaxOutput()->Get();
  }
  PixelObjectType*       GetMaximumOutput();
  const PixelObjectType* GetMaximumOutput() const;
 
  RealType GetComponentMean() const
  {
    return this->GetComponentMeanOutput()->Get();
  }
  RealObjectType*       GetComponentMeanOutput();
  const RealObjectType* GetComponentMeanOutput() const;
 
  RealType GetComponentCorrelation() const
  {
    return this->GetComponentCorrelationOutput()->Get();
  }
  RealObjectType*       GetComponentCorrelationOutput();
  const RealObjectType* GetComponentCorrelationOutput() const;
 
  RealType GetComponentCovariance() const
  {
    return this->GetComponentCovarianceOutput()->Get();
  }
  RealObjectType*       GetComponentCovarianceOutput();
  const RealObjectType* GetComponentCovarianceOutput() const;
 
  RealPixelType GetMean() const
  {
    return this->GetMeanOutput()->Get();
  }
  RealPixelObjectType*       GetMeanOutput();
  const RealPixelObjectType* GetMeanOutput() const;
 
  RealPixelType GetSum() const
  {
    return this->GetSumOutput()->Get();
  }
  RealPixelObjectType*       GetSumOutput();
  const RealPixelObjectType* GetSumOutput() const;
 
  MatrixType GetCorrelation() const
  {
    return this->GetCorrelation()->Get();
  }
  MatrixObjectType*       GetCorrelationOutput();
  const MatrixObjectType* GetCorrelationOutput() const;
 
  MatrixType GetCovariance() const
  {
    return this->GetCovarianceOutput()->Get();
  }
  MatrixObjectType*       GetCovarianceOutput();
  const MatrixObjectType* GetCovarianceOutput() const;
 
  DataObjectPointer MakeOutput(DataObjectPointerArraySizeType idx) override;
  using Superclass::MakeOutput;
 
  void Reset(void) override;
 
  void Synthetize(void) override;
 
  itkSetMacro(EnableMinMax, bool);
  itkGetMacro(EnableMinMax, bool);
 
  itkSetMacro(EnableFirstOrderStats, bool);
  itkGetMacro(EnableFirstOrderStats, bool);
 
  itkSetMacro(EnableSecondOrderStats, bool);
  itkGetMacro(EnableSecondOrderStats, bool);
 
  itkSetMacro(IgnoreInfiniteValues, bool);
  itkGetMacro(IgnoreInfiniteValues, bool);
 
  itkSetMacro(IgnoreUserDefinedValue, bool);
  itkGetMacro(IgnoreUserDefinedValue, bool);
 
  itkSetMacro(UserIgnoredValue, InternalPixelType);
  itkGetMacro(UserIgnoredValue, InternalPixelType);
 
  itkSetMacro(UseUnbiasedEstimator, bool);
  itkGetMacro(UseUnbiasedEstimator, bool);
 
protected:
  PersistentStreamingStatisticsVectorImageFilter();
 
  ~PersistentStreamingStatisticsVectorImageFilter() override
  {
  }
 
  void AllocateOutputs() override;
 
  void GenerateOutputInformation() override;
 
  void PrintSelf(std::ostream& os, itk::Indent indent) const override;
 
  void ThreadedGenerateData(const RegionType& outputRegionForThread, itk::ThreadIdType threadId) override;
 
private:
  PersistentStreamingStatisticsVectorImageFilter(const Self&) = delete;
  void operator=(const Self&) = delete;
 
  bool m_EnableMinMax;
  bool m_EnableFirstOrderStats;
  bool m_EnableSecondOrderStats;
 
 
  /* use an unbiased estimator to compute the covariance */
  bool m_UseUnbiasedEstimator;
 
  std::vector<PixelType>     m_ThreadMin;
  std::vector<PixelType>     m_ThreadMax;
  std::vector<RealType>      m_ThreadFirstOrderComponentAccumulators;
  std::vector<RealType>      m_ThreadSecondOrderComponentAccumulators;
  std::vector<RealPixelType> m_ThreadFirstOrderAccumulators;
  std::vector<MatrixType>    m_ThreadSecondOrderAccumulators;
 
  /* Ignored values */
  bool                      m_IgnoreInfiniteValues;
  bool                      m_IgnoreUserDefinedValue;
  InternalPixelType         m_UserIgnoredValue;
  std::vector<unsigned int> m_IgnoredInfinitePixelCount;
  std::vector<unsigned int> m_IgnoredUserPixelCount;
 
}; // end of class PersistentStreamingStatisticsVectorImageFilter
 
template <class TInputImage, class TPrecision = typename itk::NumericTraits<typename TInputImage::InternalPixelType>::RealType>
class ITK_EXPORT StreamingStatisticsVectorImageFilter
    : public PersistentFilterStreamingDecorator<PersistentStreamingStatisticsVectorImageFilter<TInputImage, TPrecision>>
{
public:
  typedef StreamingStatisticsVectorImageFilter Self;
  typedef PersistentFilterStreamingDecorator<PersistentStreamingStatisticsVectorImageFilter<TInputImage, TPrecision>> Superclass;
  typedef itk::SmartPointer<Self>       Pointer;
  typedef itk::SmartPointer<const Self> ConstPointer;
 
  itkNewMacro(Self);
 
  itkTypeMacro(StreamingStatisticsVectorImageFilter, PersistentFilterStreamingDecorator);
 
  typedef TInputImage                     InputImageType;
  typedef typename Superclass::FilterType StatFilterType;
 
  typedef typename StatFilterType::PixelType           PixelType;
  typedef typename StatFilterType::RealType            RealType;
  typedef typename StatFilterType::RealObjectType      RealObjectType;
  typedef typename StatFilterType::RealPixelType       RealPixelType;
  typedef typename StatFilterType::RealPixelObjectType RealPixelObjectType;
  typedef typename StatFilterType::MatrixType          MatrixType;
  typedef typename StatFilterType::MatrixObjectType    MatrixObjectType;
  typedef typename StatFilterType::CountType           CountType;
  typedef typename StatFilterType::CountObjectType     CountObjectType;
 
  typedef typename StatFilterType::InternalPixelType InternalPixelType;
 
  using Superclass::SetInput;
  void SetInput(InputImageType* input)
  {
    this->GetFilter()->SetInput(input);
  }
  const InputImageType* GetInput()
  {
    return this->GetFilter()->GetInput();
  }
 
  CountType GetNbRelevantPixels() const
  {
    return this->GetFilter()->GetNbRelevantPixelsOutput()->Get();
  }
  CountObjectType* GetNbRelevantPixelsOutput()
  {
    return this->GetFilter()->GetNbRelevantPixelsOutput();
  }
  const CountObjectType* GetNbRelevantPixelsOutput() const
  {
    return this->GetFilter()->GetNbRelevantPixelsOutput();
  }
 
 
  RealPixelType GetMinimum() const
  {
    return this->GetFilter()->GetMinimumOutput()->Get();
  }
  RealPixelObjectType* GetMinimumOutput()
  {
    return this->GetFilter()->GetMinimumOutput();
  }
  const RealPixelObjectType* GetMinimumOutput() const
  {
    return this->GetFilter()->GetMinimumOutput();
  }
 
  RealPixelType GetMaximum() const
  {
    return this->GetFilter()->GetMaximumOutput()->Get();
  }
  RealPixelObjectType* GetMaximumOutput()
  {
    return this->GetFilter()->GetMaximumOutput();
  }
  const RealPixelObjectType* GetMaximumOutput() const
  {
    return this->GetFilter()->GetMaximumOutput();
  }
 
  RealPixelType GetMean() const
  {
    return this->GetFilter()->GetMeanOutput()->Get();
  }
  RealPixelObjectType* GetMeanOutput()
  {
    return this->GetFilter()->GetMeanOutput();
  }
  const RealPixelObjectType* GetMeanOutput() const
  {
    return this->GetFilter()->GetMeanOutput();
  }
 
  RealPixelType GetSum() const
  {
    return this->GetFilter()->GetSumOutput()->Get();
  }
  RealPixelObjectType* GetSumOutput()
  {
    return this->GetFilter()->GetSumOutput();
  }
  const RealPixelObjectType* GetSumOutput() const
  {
    return this->GetFilter()->GetSumOutput();
  }
 
  MatrixType GetCovariance() const
  {
    return this->GetFilter()->GetCovarianceOutput()->Get();
  }
  MatrixObjectType* GetCovarianceOutput()
  {
    return this->GetFilter()->GetCovarianceOutput();
  }
  const MatrixObjectType* GetCovarianceOutput() const
  {
    return this->GetFilter()->GetCovarianceOutput();
  }
 
  MatrixType GetCorrelation() const
  {
    return this->GetFilter()->GetCorrelationOutput()->Get();
  }
  MatrixObjectType* GetCorrelationOutput()
  {
    return this->GetFilter()->GetCorrelationOutput();
  }
  const MatrixObjectType* GetCorrelationOutput() const
  {
    return this->GetFilter()->GetCorrelationOutput();
  }
 
  RealType GetComponentMean() const
  {
    return this->GetFilter()->GetComponentMeanOutput()->Get();
  }
  RealObjectType* GetComponentMeanOutput()
  {
    return this->GetFilter()->GetComponentMeanOutput();
  }
  const RealObjectType* GetComponentMeanOutput() const
  {
    return this->GetFilter()->GetComponentMeanOutput();
  }
 
  RealType GetComponentCovariance() const
  {
    return this->GetFilter()->GetComponentCovarianceOutput()->Get();
  }
  RealObjectType* GetComponentCovarianceOutput()
  {
    return this->GetFilter()->GetComponentCovarianceOutput();
  }
  const RealObjectType* GetComponentCovarianceOutput() const
  {
    return this->GetFilter()->GetComponentCovarianceOutput();
  }
 
  RealType GetComponentCorrelation() const
  {
    return this->GetFilter()->GetComponentCorrelationOutput()->Get();
  }
  RealObjectType* GetComponentCorrelationOutput()
  {
    return this->GetFilter()->GetComponentCorrelationOutput();
  }
  const RealObjectType* GetComponentCorrelationOutput() const
  {
    return this->GetFilter()->GetComponentCorrelationOutput();
  }
 
  otbSetObjectMemberMacro(Filter, EnableMinMax, bool);
  otbGetObjectMemberMacro(Filter, EnableMinMax, bool);
 
  otbSetObjectMemberMacro(Filter, EnableFirstOrderStats, bool);
  otbGetObjectMemberMacro(Filter, EnableFirstOrderStats, bool);
 
  otbSetObjectMemberMacro(Filter, EnableSecondOrderStats, bool);
  otbGetObjectMemberMacro(Filter, EnableSecondOrderStats, bool);
 
  otbSetObjectMemberMacro(Filter, IgnoreInfiniteValues, bool);
  otbGetObjectMemberMacro(Filter, IgnoreInfiniteValues, bool);
 
  otbSetObjectMemberMacro(Filter, IgnoreUserDefinedValue, bool);
  otbGetObjectMemberMacro(Filter, IgnoreUserDefinedValue, bool);
 
  otbSetObjectMemberMacro(Filter, UserIgnoredValue, InternalPixelType);
  otbGetObjectMemberMacro(Filter, UserIgnoredValue, InternalPixelType);
 
  otbSetObjectMemberMacro(Filter, UseUnbiasedEstimator, bool);
  otbGetObjectMemberMacro(Filter, UseUnbiasedEstimator, bool);
 
protected:
  StreamingStatisticsVectorImageFilter()
  {
  }
 
  ~StreamingStatisticsVectorImageFilter() override
  {
  }
 
private:
  StreamingStatisticsVectorImageFilter(const Self&) = delete;
  void operator=(const Self&) = delete;
};
 
} // end namespace otb
 
#ifndef OTB_MANUAL_INSTANTIATION
#include "otbStreamingStatisticsVectorImageFilter.hxx"
#endif
 
#endif