otbComputeHistoFilter.hxx

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/*
 * Copyright (C) 2005-2022 Centre National d'Etudes Spatiales (CNES)
 *
 * This file is part of Orfeo Toolbox
 *
 *     https://www.orfeo-toolbox.org/
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
 
#ifndef otbComputeHistoFilter_hxx
#define otbComputeHistoFilter_hxx
 
#include "otbComputeHistoFilter.h"
 
#include <limits>
 
namespace otb
{
 
template <class TInputImage, class TOutputImage>
ComputeHistoFilter<TInputImage, TOutputImage>::ComputeHistoFilter()
{
  this->SetNumberOfRequiredOutputs(2);
  this->SetNthOutput(0, this->MakeOutput(0));
  this->SetNthOutput(1, this->MakeOutput(1));
  m_Min        = std::numeric_limits<InputPixelType>::quiet_NaN();
  m_Max        = std::numeric_limits<InputPixelType>::quiet_NaN();
  m_NoDataFlag = false;
  m_NoData     = std::numeric_limits<InputPixelType>::quiet_NaN();
  m_NbBin      = 256;
  m_Threshold  = -1;
  m_ThumbSize.Fill(0);
  m_ValidThreads = 1;
  m_Step         = -1;
}
 
template <class TInputImage, class TOutputImage>
itk::ProcessObject::DataObjectPointer ComputeHistoFilter<TInputImage, TOutputImage>::MakeOutput(itk::ProcessObject::DataObjectPointerArraySizeType idx)
{
  itk::DataObject::Pointer output;
 
  switch (idx)
  {
  case 0:
    output = (OutputImageType::New()).GetPointer();
    break;
  case 1:
    output = (OutputImageType::New()).GetPointer();
    break;
  default:
    std::cerr << "No output " << idx << std::endl;
    output = NULL;
    break;
  }
  return output;
}
 
template <class TInputImage, class TOutputImage>
itk::ProcessObject::DataObjectPointer ComputeHistoFilter<TInputImage, TOutputImage>::MakeOutput(const itk::ProcessObject::DataObjectIdentifierType& name)
{
  return Superclass::MakeOutput(name);
}
 
template <class TInputImage, class TOutputImage>
void ComputeHistoFilter<TInputImage, TOutputImage>::GenerateInputRequestedRegion()
{
  typename Superclass::InputImagePointer inputPtr(const_cast<InputImageType*>(this->GetInput()));
  inputPtr->SetRequestedRegion(this->GetOutput()->GetRequestedRegion());
  if (inputPtr->GetRequestedRegion().GetNumberOfPixels() == 0)
  {
    inputPtr->SetRequestedRegionToLargestPossibleRegion();
  }
}
 
template <class TInputImage, class TOutputImage>
void ComputeHistoFilter<TInputImage, TOutputImage>::GenerateOutputInformation()
{
  Superclass::GenerateOutputInformation();
  typename InputImageType::ConstPointer input(this->GetInput());
  typename OutputImageType::Pointer     output(this->GetHistoOutput());
  typename OutputImageType::Pointer     outImage(this->GetOutput());
 
  typename InputImageType::RegionType inputLargestRegion(input->GetLargestPossibleRegion());
  outImage->SetLargestPossibleRegion(inputLargestRegion);
 
  typename OutputImageType::IndexType start;
  typename OutputImageType::SizeType  size;
 
  start.Fill(0);
 
  assert(m_ThumbSize[0] != 0);
  assert(m_ThumbSize[1] != 0);
 
  // TODO throw error if 0
 
  size[0] = std::ceil(inputLargestRegion.GetSize()[0] / static_cast<double>(m_ThumbSize[0]));
  size[1] = std::ceil(inputLargestRegion.GetSize()[1] / static_cast<double>(m_ThumbSize[1]));
 
  typename OutputImageType::RegionType region;
  region.SetSize(size);
  region.SetIndex(start);
  output->SetNumberOfComponentsPerPixel(m_NbBin);
  output->SetLargestPossibleRegion(region);
  typename InputImageType::SpacingType inputSpacing(input->GetSignedSpacing());
  typename InputImageType::PointType   inputOrigin(input->GetOrigin());
 
  typename OutputImageType::SpacingType histoSpacing;
  histoSpacing[0] = inputSpacing[0] * m_ThumbSize[0];
  histoSpacing[1] = inputSpacing[1] * m_ThumbSize[1];
  output->SetSignedSpacing(histoSpacing);
 
  typename OutputImageType::PointType histoOrigin;
  histoOrigin[0] = histoSpacing[0] / 2 + inputOrigin[0] - inputSpacing[0] / 2;
  histoOrigin[1] = histoSpacing[1] / 2 + inputOrigin[1] - inputSpacing[1] / 2;
  output->SetOrigin(histoOrigin);
}
 
template <class TInputImage, class TOutputImage>
void ComputeHistoFilter<TInputImage, TOutputImage>::GenerateOutputRequestedRegion(itk::DataObject* itkNotUsed(output))
{
  if (GetHistoOutput()->GetRequestedRegion().GetNumberOfPixels() == 0)
  {
    GetHistoOutput()->SetRequestedRegionToLargestPossibleRegion();
  }
  typename OutputImageType::Pointer outImage(this->GetOutput());
  SetRequestedRegion(outImage);
}
 
template <class TInputImage, class TOutputImage>
void ComputeHistoFilter<TInputImage, TOutputImage>::GenerateData()
{
  this->AllocateOutputs();
 
  // Set up the multithreaded processing
  typename itk::ImageSource<OutputImageType>::ThreadStruct str;
  str.Filter = this;
 
  // Get the output pointer
  const OutputImageType*              outputPtr(this->GetOutput());
  const itk::ImageRegionSplitterBase* splitter(this->GetImageRegionSplitter());
  m_ValidThreads = splitter->GetNumberOfSplits(outputPtr->GetRequestedRegion(), this->GetNumberOfThreads());
 
  this->BeforeThreadedGenerateData();
 
  this->GetMultiThreader()->SetNumberOfThreads(m_ValidThreads);
  this->GetMultiThreader()->SetSingleMethod(this->ThreaderCallback, &str);
  // multithread the execution
  this->GetMultiThreader()->SingleMethodExecute();
 
  this->AfterThreadedGenerateData();
}
 
template <class TInputImage, class TOutputImage>
void ComputeHistoFilter<TInputImage, TOutputImage>::BeforeThreadedGenerateData()
{
  // Initializing output
  typename OutputImageType::Pointer   output(this->GetHistoOutput());
  typename OutputImageType::PixelType zeroPixel(m_NbBin);
  zeroPixel.Fill(0);
  output->FillBuffer(zeroPixel);
 
  // Initializing shared variable with thread number parameter
  SizeType outSize(output->GetRequestedRegion().GetSize());
  m_HistoThread.resize(m_ValidThreads * outSize[0] * outSize[1]);
  m_HistoThread.shrink_to_fit();
  std::fill(m_HistoThread.begin(), m_HistoThread.end(), zeroPixel);
 
  m_Step = static_cast<double>(m_Max - m_Min) / static_cast<double>(m_NbBin - 1);
}
 
template <class TInputImage, class TOutputImage>
void ComputeHistoFilter<TInputImage, TOutputImage>::ThreadedGenerateData(const OutputImageRegionType& outputRegionForThread, itk::ThreadIdType threadId)
{
  assert(m_Step > 0);
  // TODO throw error
 
  // itk::ProgressReporter progress(this , threadId ,
  //               outputRegionForThread.GetNumberOfPixels() );
  typename InputImageType::ConstPointer input(this->GetInput());
  typename OutputImageType::Pointer     output(this->GetHistoOutput());
 
  OutputImageRegionType histoRegion(GetHistoOutput()->GetRequestedRegion());
  SizeType              outSize(histoRegion.GetSize());
  IndexType             outIndex(histoRegion.GetIndex());
 
  typename InputImageType::RegionType region;
 
  unsigned int threadIndex(threadId * outSize[0] * outSize[1]), pixel(0);
 
  for (unsigned int nthHisto = 0; nthHisto < outSize[0] * outSize[1]; nthHisto++)
  {
    IndexType start;
    start[0] = (outIndex[0] + nthHisto % outSize[0]) * m_ThumbSize[0];
    start[1] = (outIndex[1] + nthHisto / outSize[0]) * m_ThumbSize[1];
    region.SetSize(m_ThumbSize);
    region.SetIndex(start);
 
    if (!region.Crop(outputRegionForThread))
      continue;
 
    typename itk::ImageRegionConstIterator<InputImageType> it(input, region);
    InputPixelType                                         currentPixel(0);
    for (it.GoToBegin(); !it.IsAtEnd(); ++it)
    {
      currentPixel = it.Get();
      if ((currentPixel == m_NoData && m_NoDataFlag) || currentPixel > m_Max || currentPixel < m_Min)
        continue;
 
      pixel = static_cast<unsigned int>(std::round((currentPixel - m_Min) / m_Step));
      ++m_HistoThread[threadIndex + nthHisto][pixel];
    }
  }
}
 
template <class TInputImage, class TOutputImage>
void ComputeHistoFilter<TInputImage, TOutputImage>::AfterThreadedGenerateData()
{
  typename OutputImageType::Pointer                  output(this->GetHistoOutput());
  typename itk::ImageRegionIterator<OutputImageType> oit(output, output->GetRequestedRegion());
  OutputImageRegionType                              histoRegion(GetHistoOutput()->GetRequestedRegion());
  SizeType                                           outSize(histoRegion.GetSize());
  IndexType                                          outIndex(histoRegion.GetIndex());
 
  unsigned int agreg(0), total(0);
 
  for (oit.GoToBegin(); !oit.IsAtEnd(); ++oit)
  {
    total = 0;
 
    for (unsigned int i = 0; i < m_NbBin; i++)
    {
      agreg = 0;
 
      for (unsigned int threadId = 0; threadId < m_ValidThreads; threadId++)
      {
        agreg += m_HistoThread[threadId * outSize[0] * outSize[1] + (oit.GetIndex()[1] - outIndex[1]) * outSize[0] + ((oit.GetIndex()[0] - outIndex[0]))][i];
      }
      oit.Get()[i] = agreg;
      total += agreg;
    }
    if (m_Threshold > 0)
      ApplyThreshold(oit, total);
  }
}
 
template <class TInputImage, class TOutputImage>
void ComputeHistoFilter<TInputImage, TOutputImage>::ApplyThreshold(typename itk::ImageRegionIterator<OutputImageType> oit, unsigned int total)
{
  unsigned int rest(0);
  unsigned int height(static_cast<unsigned int>(m_Threshold * (total / m_NbBin)));
  // Do i need to static_cast in a an assignation?
  // Warning!!!! Need to handle out of bound int!!!
 
  for (unsigned int i = 0; i < m_NbBin; i++)
  {
    if (static_cast<unsigned int>(oit.Get()[i]) > height)
    {
      rest += oit.Get()[i] - height;
      oit.Get()[i] = height;
    }
  }
  height = rest / m_NbBin;
  rest   = rest % m_NbBin;
  for (unsigned int i = 0; i < m_NbBin; i++)
  {
    oit.Get()[i] += height;
    if (i > (m_NbBin - rest) / 2 && i <= (m_NbBin - rest) / 2 + rest)
    {
      ++oit.Get()[i];
    }
  }
}
 
template <class TInputImage, class TOutputImage>
typename TOutputImage::Pointer ComputeHistoFilter<TInputImage, TOutputImage>::GetHistoOutput()
{
  assert(this->itk::ProcessObject::GetOutput(1));
 
  return dynamic_cast<TOutputImage*>(this->itk::ProcessObject::GetOutput(1));
}
 
template <class TInputImage, class TOutputImage>
void ComputeHistoFilter<TInputImage, TOutputImage>::SetRequestedRegion(itk::ImageBase<2>* image)
{
  OutputImageRegionType histoRegion(GetHistoOutput()->GetRequestedRegion());
 
  IndexType start;
  start[0] = histoRegion.GetIndex()[0] * m_ThumbSize[0];
  start[1] = histoRegion.GetIndex()[1] * m_ThumbSize[1];
 
  SizeType size;
  size[0] = histoRegion.GetSize()[0] * m_ThumbSize[0];
  size[1] = histoRegion.GetSize()[1] * m_ThumbSize[1];
 
  typename OutputImageType::RegionType outputRequestedRegion;
  outputRequestedRegion.SetIndex(start);
  outputRequestedRegion.SetSize(size);
 
  outputRequestedRegion.Crop(image->GetLargestPossibleRegion());
  image->SetRequestedRegion(outputRequestedRegion);
}
 
template <class TInputImage, class TOutputImage>
void ComputeHistoFilter<TInputImage, TOutputImage>::PrintSelf(std::ostream& os, itk::Indent indent) const
{
  Superclass::PrintSelf(os, indent);
  os << indent << "Is no data activated: " << m_NoDataFlag << std::endl;
  os << indent << "No Data: " << m_NoData << std::endl;
  os << indent << "Minimum: " << m_Min << std::endl;
  os << indent << "Maximum: " << m_Max << std::endl;
  os << indent << "Step: " << m_Step << std::endl;
  os << indent << "Number of bin: " << m_NbBin << std::endl;
  os << indent << "Thumbnail size: " << m_ThumbSize << std::endl;
  os << indent << "Threshold value: " << m_Threshold << std::endl;
}
 
} // End namespace otb
 
#endif