This class implements a finite difference partial differential equation solver for evolving surfaces embedded in volumes as level-sets. More...

#include <itkMultiphaseSparseFiniteDifferenceImageFilter.h>

Inheritance diagram for itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >:

Collaboration diagram for itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >:

Classes
struct	SparseDataStruct

Public Types
typedef NeighborhoodAlgorithm::ImageBoundaryFacesCalculator < StatusImageType >	BFCType

typedef Vector< float, itkGetStaticConstMacro(ImageDimension) >	CentroidVectorType

typedef SmartPointer< const Self >	ConstPointer

typedef DataObject::Pointer	DataObjectPointer

typedef std::vector < DataObjectPointer >	DataObjectPointerArray

typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType

typedef Superclass::FeatureImagePointer	FeatureImagePointer

typedef Superclass::FeatureImageType	FeatureImageType

typedef FeatureImageType::PixelType	FeaturePixelType

typedef Superclass::FeaturePointType	FeaturePointType

typedef Superclass::FeatureRegionType	FeatureRegionType

typedef Superclass::FeatureSizeType	FeatureSizeType

typedef Superclass::FeatureSpacingType	FeatureSpacingType

typedef FiniteDifferenceFunctionType::FloatOffsetType	FiniteDifferenceFunctionFloatOffsetType

typedef Superclass::FiniteDifferenceFunctionPointer	FiniteDifferenceFunctionPointer

typedef Superclass::FiniteDifferenceFunctionType	FiniteDifferenceFunctionType

typedef Superclass::IdCellType	IdCellType

typedef InputPointType::CoordRepType	InputCoordRepType

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef InputImageType::PixelType	InputImagePixelType

typedef Superclass::InputImagePointer	InputImagePointer

typedef InputImageType::RegionType	InputImageRegionType

typedef Superclass::InputImageType	InputImageType

typedef Superclass::InputIndexType	InputIndexType

typedef Superclass::InputIndexValueType	InputIndexValueType

typedef Superclass::InputPixelType	InputPixelType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InputRegionType	InputRegionType

typedef Superclass::InputSizeType	InputSizeType

typedef Superclass::InputSizeValueType	InputSizeValueType

typedef Superclass::InputSpacingType	InputSpacingType

typedef KdTreeGeneratorType::Pointer	KdTreeGeneratorPointer

typedef Statistics::KdTreeGenerator < SampleType >	KdTreeGeneratorType

typedef KdTreeType::Pointer	KdTreePointer

typedef KdTreeGeneratorType::KdTreeType	KdTreeType

typedef LayerType::ConstIterator	LayerConstIterator

typedef LayerType::Iterator	LayerIterator

typedef LayerListType::const_iterator	LayerListConstIterator

typedef LayerListType::iterator	LayerListIterator

typedef std::vector < LayerPointerType >	LayerListType

typedef LayerNodeStorageType::Pointer	LayerNodeStoragePointer

typedef ObjectStore < LayerNodeType >	LayerNodeStorageType

typedef SparseFieldLevelSetNode < OutputIndexType >	LayerNodeType

typedef LayerType::Pointer	LayerPointerType

typedef SparseFieldLayer < LayerNodeType >	LayerType

typedef SparseFieldCityBlockNeighborList < NeighborhoodIterator < OutputImageType > >	NeighborListType

typedef NeighborListType::OffsetType	OffsetType

typedef Superclass::OutputImagePixelType	OutputImagePixelType

typedef Superclass::OutputImagePointer	OutputImagePointer

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef Superclass::OutputImageType	OutputImageType

typedef Superclass::OutputIndexType	OutputIndexType

typedef Superclass::OutputIndexValueType	OutputIndexValueType

typedef Superclass::OutputPixelType	OutputPixelType

typedef Superclass::OutputRegionType	OutputRegionType

typedef Superclass::OutputSizeType	OutputSizeType

typedef OutputImageType::SizeValueType	OutputSizeValueType

typedef SmartPointer< Self >	Pointer

typedef FiniteDifferenceFunctionType::RadiusType	RadiusType

typedef Statistics::ListSample < CentroidVectorType >	SampleType

typedef MultiphaseSparseFiniteDifferenceImageFilter	Self

typedef StatusImageType::Pointer	StatusImagePointer

typedef Image< StatusType, itkGetStaticConstMacro(ImageDimension) >	StatusImageType

typedef signed char	StatusType

typedef MultiphaseFiniteDifferenceImageFilter < TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >	Superclass

typedef Superclass::TimeStepType	TimeStepType

typedef std::vector< TimeStepType >	TimeStepVectorType

typedef UpdateBufferType::const_iterator	UpdateBufferConstIterator

typedef std::vector< ValueType >	UpdateBufferType

typedef InputImageType::ValueType	ValueType

typedef std::vector< IdCellType >	VectorIdCellType

typedef ZeroCrossingFilterType::Pointer	ZeroCrossingFilterPointer

typedef ZeroCrossingImageFilter < InputImageType, InputImageType >	ZeroCrossingFilterType

Public Member Functions
virtual void	AbortGenerateDataOff ()

virtual void	AbortGenerateDataOn ()

unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual bool	CanRunInPlace () const

virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual void	DebugOff () const

virtual void	DebugOn () const

virtual void	Delete ()

virtual void	EnlargeOutputRequestedRegion (DataObject *)

virtual const bool &	GetAbortGenerateData ()

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

virtual const FiniteDifferenceFunctionPointer	GetDifferenceFunction (const IdCellType &functionIndex) const

virtual const unsigned int &	GetElapsedIterations ()

virtual const bool &	GetInitializedState ()

virtual bool	GetInPlace () const

const InputImageType *	GetInput (void)

const InputImageType *	GetInput (unsigned int idx)

DataObjectPointerArray &	GetInputs ()

virtual bool	GetInterpolateSurfaceLocation () const

virtual ValueType	GetIsoSurfaceValue () const

InputImagePointer	GetLevelSet (const IdCellType &i)

virtual const bool &	GetManualReinitialization ()

virtual const double &	GetMaximumRMSError ()

MetaDataDictionary &	GetMetaDataDictionary (void)

const MetaDataDictionary &	GetMetaDataDictionary (void) const

virtual unsigned long	GetMTime () const

MultiThreader *	GetMultiThreader ()

virtual const char *	GetNameOfClass () const

DataObjectPointerArraySizeType	GetNumberOfInputs () const

virtual const unsigned int &	GetNumberOfIterations ()

virtual unsigned int	GetNumberOfLayers () const

DataObjectPointerArraySizeType	GetNumberOfOutputs () const

virtual const int &	GetNumberOfThreads ()

virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const

OutputImageType *	GetOutput (void)

OutputImageType *	GetOutput (unsigned int idx)

DataObjectPointerArray &	GetOutputs ()

virtual const float &	GetProgress ()

virtual int	GetReferenceCount () const

virtual const bool &	GetReleaseDataBeforeUpdateFlag ()

virtual bool	GetReleaseDataFlag () const

virtual const double &	GetRMSChange ()

virtual const bool &	GetUseImageSpacing ()

virtual void	GraftNthOutput (unsigned int idx, DataObject *output)

virtual void	GraftOutput (DataObject *output)

bool	HasObserver (const EventObject &event) const

virtual void	InitializedStateOff ()

virtual void	InitializedStateOn ()

virtual void	InPlaceOff ()

virtual void	InPlaceOn ()

void	InterpolateSurfaceLocationOff ()

void	InterpolateSurfaceLocationOn ()

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual DataObjectPointer	MakeOutput (unsigned int idx)

virtual void	ManualReinitializationOff ()

virtual void	ManualReinitializationOn ()

virtual void	Modified () const

virtual void	PopBackInput ()

virtual void	PopFrontInput ()

virtual void	PrepareOutputs ()

void	Print (std::ostream &os, Indent indent=0) const

virtual void	PropagateRequestedRegion (DataObject *output)

virtual void	PushBackInput (const InputImageType *image)

virtual void	PushFrontInput (const InputImageType *image)

virtual void	Register () const

virtual void	ReleaseDataBeforeUpdateFlagOff ()

virtual void	ReleaseDataBeforeUpdateFlagOn ()

void	ReleaseDataFlagOff ()

void	ReleaseDataFlagOn ()

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

virtual void	ResetPipeline ()

virtual void	SetAbortGenerateData (bool _arg)

void	SetDebug (bool debugFlag) const

virtual void	SetDifferenceFunction (const IdCellType &functionIndex, FiniteDifferenceFunctionPointer function)

virtual void	SetElapsedIterations (unsigned int _arg)

void	SetFunctionCount (const IdCellType &n)

virtual void	SetInitializedState (bool _arg)

virtual void	SetInPlace (bool _arg)

virtual void	SetInput (const InputImageType *image)

virtual void	SetInput (unsigned int, const TFeatureImage *image)

virtual void	SetInterpolateSurfaceLocation (bool _arg)

virtual void	SetIsoSurfaceValue (ValueType _arg)

void	SetKdTree (KdTreeType *kdtree)

void	SetLevelSet (const IdCellType &i, const InputImageType *levelSet)

void	SetLookup (VectorIdCellType lookup)

virtual void	SetManualReinitialization (bool _arg)

virtual void	SetMaximumRMSError (double _arg)

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetNumberOfIterations (unsigned int _arg)

virtual void	SetNumberOfLayers (unsigned int _arg)

virtual void	SetNumberOfThreads (int _arg)

virtual void	SetProgress (float _arg)

virtual void	SetReferenceCount (int)

virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)

virtual void	SetReleaseDataFlag (bool flag)

virtual void	SetRMSChange (double _arg)

virtual void	SetUseImageSpacing (bool _arg)

	typedef (Concept::EqualityComparable< typename TOutputImage::PixelType >) OutputEqualityComparableCheck

	typedef (Concept::Convertible< double, typename TOutputImage::PixelType >) DoubleConvertibleToOutputCheck

	typedef (Concept::OStreamWritable< typename TOutputImage::PixelType >) OutputOStreamWritableCheck

virtual void	UnRegister () const

virtual void	Update ()

virtual void	UpdateLargestPossibleRegion ()

virtual void	UpdateOutputData (DataObject *output)

virtual void	UpdateOutputInformation ()

void	UpdateProgress (float amount)

virtual void	UseImageSpacingOff ()

virtual void	UseImageSpacingOn ()

Static Public Member Functions
static void	BreakOnError ()

static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Static Public Attributes
static const unsigned int	ImageDimension = Superclass::ImageDimension

static const unsigned int	InputImageDimension

static const unsigned int	OutputImageDimension

Protected Types
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension)>	InputToOutputRegionCopierType

typedef int	InternalReferenceCountType

typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension)>	OutputToInputRegionCopierType

Protected Member Functions
	MultiphaseSparseFiniteDifferenceImageFilter ()

	~MultiphaseSparseFiniteDifferenceImageFilter ()

virtual void	AddInput (DataObject *input)

virtual void	AddOutput (DataObject *output)

virtual void	AfterThreadedGenerateData ()

virtual void	AllocateOutputs ()

void	AllocateUpdateBuffer ()

void	ApplyUpdate (TimeStepType dt)

virtual void	BeforeThreadedGenerateData ()

virtual void	CacheInputReleaseDataFlags ()

TimeStepType	CalculateChange ()

virtual ValueType	CalculateUpdateValue (const OutputIndexType &, const TimeStepType &dt, const ValueType &value, const ValueType &change)

virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)

virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)

void	ConstructActiveLayer ()

void	ConstructLayer (SparseDataStruct *sparsePtr, StatusType from, StatusType to)

void	CopyInputToOutput ()

virtual void	GenerateData ()

virtual void	GenerateInputRequestedRegion ()

virtual void	GenerateOutputInformation ()

virtual void	GenerateOutputRequestedRegion (DataObject *output)

const DataObject *	GetInput (unsigned int idx) const

virtual const unsigned int &	GetNumberOfRequiredInputs ()

virtual const unsigned int &	GetNumberOfRequiredOutputs ()

const DataObject *	GetOutput (unsigned int idx) const

virtual ValueType	GetValueOne () const

virtual ValueType	GetValueZero () const

virtual bool	Halt ()

void	Initialize ()

void	InitializeActiveLayerValues ()

void	InitializeBackgroundConstants ()

virtual void	InitializeBackgroundPixels ()

void	InitializeIteration ()

virtual void	PostProcessOutput ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	PrintSelf (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

void	ProcessOutsideList (LayerType *OutsideList, StatusType ChangeToStatus)

void	ProcessStatusList (LayerType InputList, LayerType OutputList, StatusType ChangeToStatus, StatusType SearchForStatus)

void	PropagateAllLayerValues ()

void	PropagateFunctionLayerValues (unsigned int functionIndex)

void	PropagateLayerValues (SparseDataStruct *sparsePtr, StatusType from, StatusType to, StatusType promote, int InOrOut)

virtual void	PropagateResetPipeline ()

void	PushBackInput (const DataObject *input)

void	PushFrontInput (const DataObject *input)

virtual void	ReleaseInputs ()

virtual void	RemoveInput (DataObject *input)

virtual void	RemoveOutput (DataObject *output)

TimeStepType	ResolveTimeStep (const TimeStepVectorType &timeStepList, const std::vector< bool > &valid)

virtual void	RestoreInputReleaseDataFlags ()

virtual void	SetNthInput (unsigned int num, DataObject *input)

virtual void	SetNthOutput (unsigned int num, DataObject *output)

void	SetNumberOfInputs (unsigned int num)

void	SetNumberOfOutputs (unsigned int num)

virtual void	SetNumberOfRequiredInputs (unsigned int _arg)

virtual void	SetNumberOfRequiredOutputs (unsigned int _arg)

virtual int	SplitRequestedRegion (int i, int num, OutputImageRegionType &splitRegion)

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, int threadId)

virtual bool	ThreadedHalt (void *)

void	UpdateActiveLayerValues (TimeStepType dt, LayerType StatusUpList, LayerType StatusDownList)

virtual void	UpdatePixel (unsigned int, unsigned int, NeighborhoodIterator< InputImageType > &, ValueType &, bool &)

Static Protected Member Functions
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)

Protected Attributes
ValueType	m_BackgroundValue

std::vector < FiniteDifferenceFunctionPointer >	m_DifferenceFunctions

unsigned int	m_ElapsedIterations

IdCellType	m_FunctionCount

bool	m_InterpolateSurfaceLocation

ValueType	m_IsoSurfaceValue

KdTreePointer	m_KdTree

std::vector< InputImagePointer >	m_LevelSet

VectorIdCellType	m_Lookup

double	m_MaximumRMSError

NeighborListType	m_NeighborList

unsigned int	m_NumberOfIterations

unsigned int	m_NumberOfLayers

TimeStamp	m_OutputInformationMTime

std::vector< ValueType >	m_PixelDistance

InternalReferenceCountType	m_ReferenceCount

SimpleFastMutexLock	m_ReferenceCountLock

double	m_RMSChange

std::vector< SparseDataStruct * >	m_SparseData

bool	m_Updating

bool	m_UseImageSpacing

Static Protected Attributes
static double	m_ConstantGradientValue = 1.0

static const StatusType	m_StatusActiveChangingDown = -3

static const StatusType	m_StatusActiveChangingUp = -2

static const StatusType	m_StatusBoundaryPixel = -4

static const StatusType	m_StatusChanging = -1

static const StatusType	m_StatusNull

static const ValueType	m_ValueOne

static const ValueType	m_ValueZero

Private Member Functions
	MultiphaseSparseFiniteDifferenceImageFilter (const Self &)

void	operator= (const Self &)

Private Attributes
bool	m_BoundsCheckingActive

unsigned int	m_CurrentFunctionIndex

unsigned int	m_RMSCounter

double	m_RMSSum

Detailed Description

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
class itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >

This class implements a finite difference partial differential equation solver for evolving surfaces embedded in volumes as level-sets.

: The "sparse field" approach to the level-set model is a logical extension of the classical narrow band technique, which seeks to minimize computational effort by restricting calculations to those pixels in a region of interest around the moving surface (the -level curve). The sparse field method uses a narrow band that is exactly the width needed to calculate changes on the level curve for the next time step. Because the band of grid points under consideration is so sparse, this approach has several advantages: the algorithm does exactly the number of calculations needed to determine the next position of the -level curve, and the distance transform around the level curve can be recomputed at each iteration.

: The sparse field algorithm works by constructing a linked list of indices that are adjacent to the -level set. These indices are called the "active set". The values at these active set indices define the position of the -level curve. The active set indices are shifted to follow the distance transform embedding of the -level curve as their values move in and out of a fixed numerical range about . In this way, the active set is maintained as only those pixels adjacent to the evolving surface. Calculations are then done only at indices contained in the active set.

: The city-block neighborhoods of the active set indices are maintained as separate lists called ``layers''. At each iteration, the values at the layers are reinitialized as the distance transform from the active set. The number of layers can be adjusted according to the footprint needed for the calculations on the level curve.

: Briefly, the sparse field solver algorithm is as follows:

For each active layer index : Compute the change at $u_{x_j}$ , the grid point in the embedding, based on local geometry and external forces and using a stable numerical scheme.

For each active layer index , add the change to the grid point value and redefine the active set indices and those of its layers based on any value changes which have moved outside of the numerical range allowed for the active set.

Starting with the first layers adjacent to the active set and moving outwards, reconstruct the distance transform by setting values in the layers according to their neighbors. At the very outer layers, add or remove indices which have come into or moved out of the sparse field.

HOW TO USE THIS CLASS: Typically, this class should be subclassed with additional functionality for specific applications. It is possible, however to use this solver as a filter directly by instantiating it and supplying it with an appropriate LevelSetFunction object via the SetDifferenceFunction method. See the subclasses and their associated documentation for more information on using this class. Also see the FiniteDifferenceImageFilter2 documentation for a general overview of this class of solvers.

INPUTS: This filter takes an itk::Image as input. The appropriate type of input image is entirely determined by the application. As a rule, however, the input type is immediately converted to the output type before processing. This is because the input is not assumed to be a real value type and must be converted to signed, real values for the calculations. The input values will also be shifted by the isosurface value so that the algorithm only needs to consider the zero level set.

OUTPUTS: The output of the filter is the distance transform embedding of the isosurface as the zero level set. Values INSIDE the surface will be NEGATIVE and values OUTSIDE the surface will be POSITIVE. The distance transform only holds for those indices in layers around the active layer. Elsewhere, the values are a fixed positive or negative that is one greater than the layer of greatest magnitude. In other words, if there are three layers, then inside values reach a minimum of -4.0 and outside values a maximum of 4.0.IndexType *this->SetNumberOfLayers(5);

PARAMETERS: The NumberOfLayers parameter controls the number of layers inside and outside of the active set (see description above). The sparse field will contain 2*NumberOfLayers+1 lists of indices: the active set and city block neighbors inside and outside the active set. It is important to specify enough layers to cover the footprint of your calculations. Curvature calculations in three dimensions, for example, require 3 layers. In two dimensions, a minimum of 2 layers is probably required. Higher order derivatives and other geometrical measures may require more layers. If too few layers are specified, then the calculations will pull values from the background, which may consist of arbitrary or random values.

: The IsoSurfaceValue indicates which value in the input represents the interface of interest. By default, this value is zero. When the solver initializes, it will subtract the IsoSurfaceValue from all values, in the input, shifting the isosurface of interest to zero in the output.

IMPORTANT!: Read the documentation for FiniteDifferenceImageFilter2 before attempting to use this filter. The solver requires that you specify a FiniteDifferenceFunction to use for calculations. This is set using the method SetDifferenceFunction in the parent class.

REFERENCES: Whitaker, Ross. A Level-Set Approach to 3D Reconstruction from Range Data. International Journal of Computer Vision. V. 29 No. 3, 203-231. 1998.

: Sethian, J.A. Level Set Methods. Cambridge University Press. 1996.

This code was adapted from the paper

   "An active contour model without edges"
    T. Chan and L. Vese.
    In Scale-Space Theories in Computer Vision, pages 141–151, 1999.

Author: Mosaliganti K., Smith B., Gelas A., Gouaillard A., Megason S.

This code was taken from the Insight Journal paper:

"Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
http://www.insight-journal.org/browse/publication/642
http://hdl.handle.net/10380/3055

That is based on the papers:

"Level Set Segmentation: Active Contours without edge"
http://www.insight-journal.org/browse/publication/322
http://hdl.handle.net/1926/1532

and

"Level set segmentation using coupled active surfaces"
http://www.insight-journal.org/browse/publication/323
http://hdl.handle.net/1926/1533

Definition at line 181 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

Member Typedef Documentation

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef NeighborhoodAlgorithm::ImageBoundaryFacesCalculator< StatusImageType > itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::BFCType

Definition at line 270 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

typedef Vector< float, itkGetStaticConstMacro(ImageDimension) > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::CentroidVectorType

inherited

Definition at line 225 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef SmartPointer<const Self> itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ConstPointer

Definition at line 191 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TOutputImage>

typedef DataObject::Pointer itk::ImageSource< TOutputImage >::DataObjectPointer

inherited

Smart Pointer type to a DataObject.

Definition at line 62 of file itkImageSource.h.

typedef std::vector<DataObjectPointer> itk::ProcessObject::DataObjectPointerArray

inherited

STL Array of SmartPointers to DataObjects

Definition at line 103 of file itkProcessObject.h.

typedef DataObjectPointerArray::size_type itk::ProcessObject::DataObjectPointerArraySizeType

inherited

Size type of an std::vector

Definition at line 112 of file itkProcessObject.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::FeatureImagePointer itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FeatureImagePointer

Definition at line 218 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::FeatureImageType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FeatureImageType

Definition at line 216 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

typedef FeatureImageType::PixelType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::FeaturePixelType

inherited

Definition at line 201 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::FeaturePointType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FeaturePointType

Definition at line 221 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::FeatureRegionType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FeatureRegionType

Definition at line 219 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::FeatureSizeType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FeatureSizeType

Definition at line 217 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::FeatureSpacingType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FeatureSpacingType

Definition at line 220 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef FiniteDifferenceFunctionType::FloatOffsetType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FiniteDifferenceFunctionFloatOffsetType

Definition at line 239 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::FiniteDifferenceFunctionPointer itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FiniteDifferenceFunctionPointer

Definition at line 237 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::FiniteDifferenceFunctionType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::FiniteDifferenceFunctionType

Definition at line 235 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::IdCellType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::IdCellType

Definition at line 232 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

typedef InputPointType::CoordRepType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::InputCoordRepType

inherited

Definition at line 186 of file itkMultiphaseFiniteDifferenceImageFilter.h.

typedef InputImageType::ConstPointer itk::InPlaceImageFilter< TFeatureImage , TOutputImage >::InputImageConstPointer

inherited

Definition at line 84 of file itkInPlaceImageFilter.h.

typedef InputImageType::PixelType itk::InPlaceImageFilter< TFeatureImage , TOutputImage >::InputImagePixelType

inherited

Definition at line 86 of file itkInPlaceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::InputImagePointer itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputImagePointer

Definition at line 206 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

typedef InputImageType::RegionType itk::InPlaceImageFilter< TFeatureImage , TOutputImage >::InputImageRegionType

inherited

Definition at line 85 of file itkInPlaceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::InputImageType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputImageType

Information derived from the image types.

Definition at line 205 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::InputIndexType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputIndexType

Definition at line 210 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::InputIndexValueType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputIndexValueType

Definition at line 211 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::InputPixelType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputPixelType

Definition at line 212 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::InputPointType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputPointType

Definition at line 213 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::InputRegionType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputRegionType

Definition at line 207 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::InputSizeType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputSizeType

Definition at line 208 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::InputSizeValueType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputSizeValueType

Definition at line 209 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::InputSpacingType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InputSpacingType

Definition at line 214 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

typedef ImageToImageFilterDetail::ImageRegionCopier<itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension)> itk::ImageToImageFilter< TFeatureImage , TOutputImage >::InputToOutputRegionCopierType

protectedinherited

Typedef for the region copier function object that converts an input region to an output region.

Definition at line 161 of file itkImageToImageFilter.h.

typedef int itk::LightObject::InternalReferenceCountType

protectedinherited

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 137 of file itkLightObject.h.

typedef KdTreeGeneratorType::Pointer itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::KdTreeGeneratorPointer

inherited

Definition at line 228 of file itkMultiphaseFiniteDifferenceImageFilter.h.

typedef Statistics::KdTreeGenerator< SampleType > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::KdTreeGeneratorType

inherited

Definition at line 227 of file itkMultiphaseFiniteDifferenceImageFilter.h.

typedef KdTreeType::Pointer itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::KdTreePointer

inherited

Definition at line 230 of file itkMultiphaseFiniteDifferenceImageFilter.h.

typedef KdTreeGeneratorType::KdTreeType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::KdTreeType

inherited

Definition at line 229 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef LayerType::ConstIterator itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::LayerConstIterator

Definition at line 248 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef LayerType::Iterator itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::LayerIterator

Definition at line 247 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef LayerListType::const_iterator itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::LayerListConstIterator

Definition at line 253 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef LayerListType::iterator itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::LayerListIterator

Definition at line 252 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef std::vector< LayerPointerType > itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::LayerListType

A type for a list of LayerPointerTypes

Definition at line 251 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef LayerNodeStorageType::Pointer itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::LayerNodeStoragePointer

Definition at line 275 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef ObjectStore< LayerNodeType > itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::LayerNodeStorageType

Memory pre-allocator used to manage layer nodes in a multi-threaded environment.

Definition at line 274 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef SparseFieldLevelSetNode< OutputIndexType > itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::LayerNodeType

Node type used in sparse field layer lists.

Definition at line 242 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef LayerType::Pointer itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::LayerPointerType

Definition at line 246 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef SparseFieldLayer< LayerNodeType > itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::LayerType

A list type used in the algorithm.

Definition at line 245 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef SparseFieldCityBlockNeighborList< NeighborhoodIterator<OutputImageType> > itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::NeighborListType

Definition at line 282 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef NeighborListType::OffsetType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::OffsetType

Definition at line 283 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

typedef Superclass::OutputImagePixelType itk::InPlaceImageFilter< TFeatureImage , TOutputImage >::OutputImagePixelType

inherited

Definition at line 79 of file itkInPlaceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::OutputImagePointer itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::OutputImagePointer

Definition at line 224 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

typedef Superclass::OutputImageRegionType itk::InPlaceImageFilter< TFeatureImage , TOutputImage >::OutputImageRegionType

inherited

Definition at line 78 of file itkInPlaceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::OutputImageType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::OutputImageType

Definition at line 223 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::OutputIndexType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::OutputIndexType

Definition at line 227 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::OutputIndexValueType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::OutputIndexValueType

Definition at line 228 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::OutputPixelType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::OutputPixelType

Definition at line 229 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::OutputRegionType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::OutputRegionType

Definition at line 225 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::OutputSizeType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::OutputSizeType

Definition at line 226 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

typedef OutputImageType::SizeValueType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::OutputSizeValueType

inherited

Definition at line 208 of file itkMultiphaseFiniteDifferenceImageFilter.h.

typedef ImageToImageFilterDetail::ImageRegionCopier<itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension)> itk::ImageToImageFilter< TFeatureImage , TOutputImage >::OutputToInputRegionCopierType

protectedinherited

Typedef for the region copier function object that converts an output region to an input region.

Definition at line 166 of file itkImageToImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef SmartPointer<Self> itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::Pointer

Definition at line 190 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

typedef FiniteDifferenceFunctionType::RadiusType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::RadiusType

inherited

Definition at line 222 of file itkMultiphaseFiniteDifferenceImageFilter.h.

typedef Statistics::ListSample< CentroidVectorType > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::SampleType

inherited

Definition at line 226 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef MultiphaseSparseFiniteDifferenceImageFilter itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::Self

Standard class typedefs

Definition at line 187 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef StatusImageType::Pointer itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::StatusImagePointer

Definition at line 263 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Image< StatusType, itkGetStaticConstMacro(ImageDimension) > itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::StatusImageType

The type of the image used to index status information. Necessary for the internals of the algorithm.

Definition at line 262 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef signed char itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::StatusType

Type used for storing status information

Definition at line 257 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell > itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::Superclass

Definition at line 189 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef Superclass::TimeStepType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::TimeStepType

Typedefs from the superclass

Definition at line 202 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

typedef std::vector< TimeStepType > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::TimeStepVectorType

inherited

Definition at line 221 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef UpdateBufferType::const_iterator itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::UpdateBufferConstIterator

Definition at line 279 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef std::vector< ValueType > itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::UpdateBufferType

Container type used to store updates to the active layer.

Definition at line 278 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef InputImageType::ValueType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ValueType

Definition at line 231 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

typedef std::vector< IdCellType > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::VectorIdCellType

inherited

Definition at line 213 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef ZeroCrossingFilterType::Pointer itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ZeroCrossingFilterPointer

Definition at line 268 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

typedef ZeroCrossingImageFilter< InputImageType, InputImageType> itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ZeroCrossingFilterType

Definition at line 266 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

Constructor & Destructor Documentation

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::MultiphaseSparseFiniteDifferenceImageFilter ( )

protected

End concept checking

Definition at line 79 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::~MultiphaseSparseFiniteDifferenceImageFilter ( )

inlineprotected

Definition at line 334 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::MultiphaseSparseFiniteDifferenceImageFilter ( const Self & )

private

Member Function Documentation

virtual void itk::ProcessObject::AbortGenerateDataOff ( )

virtualinherited

virtual void itk::ProcessObject::AbortGenerateDataOn ( )

virtualinherited

Turn on and off the AbortGenerateData flag.

void itk::ProcessObject::AddInput ( DataObject * input )

protectedvirtualinherited

Adds an input to the first null position in the input list. Expands the list memory if necessary

Reimplemented in otb::ObjectDetectionClassifier< TInputImage, TOutputVectorData, TLabel, TFunctionPrecision, TCoordRep >, otb::DescriptorsListSampleGenerator< TInputImage, TVectorData, TListSample, TLabelListSample, TOutputPrecision, TCoordRep >, otb::PersistentDescriptorsListSampleGenerator< TInputImage, TVectorData, TFunctionType, TListSample, TLabelListSample >, and otb::PersistentObjectDetectionClassifier< TInputImage, TOutputVectorData, TLabel, TFunctionType >.

Definition at line 144 of file itkProcessObject.cxx.

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *	cmd
	)

inherited

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

Definition at line 389 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), itk::ProgressAccumulator::RegisterInternalFilter(), otb::ImageFileWriter< TInputImage >::Update(), and otb::WriterWatcherBase::WriterWatcherBase().

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *	cmd
	)		const

inherited

Definition at line 401 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

void itk::ProcessObject::AddOutput ( DataObject * output )

protectedvirtualinherited

Adds an output to the first null position in the output list. Expands the list memory if necessary

Definition at line 390 of file itkProcessObject.cxx.

References itk::DataObject::ConnectSource().

template<class TOutputImage>

virtual void itk::ImageSource< TOutputImage >::AfterThreadedGenerateData ( void )

inlineprotectedvirtualinherited

If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.

Definition at line 264 of file itkImageSource.h.

virtual void itk::InPlaceImageFilter< TFeatureImage , TOutputImage >::AllocateOutputs ( )

protectedvirtualinherited

The GenerateData method normally allocates the buffers for all of the outputs of a filter. Since InPlaceImageFilter's can use an overwritten version of the input for its output, the output buffer should not be allocated. When possible, we graft the input to the filter to the output. If an InPlaceFilter has multiple outputs, then it would need to override this method to graft one of its outputs and allocate the remaining. If a filter is threaded (i.e. it provides an implementation of ThreadedGenerateData()), this method is called automatically. If an InPlaceFilter is not threaded (i.e. it provides an implementation of GenerateData()), then this method (or equivalent) must be called in GenerateData().

Reimplemented from itk::ImageSource< TOutputImage >.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::AllocateUpdateBuffer ( )

inlineprotectedvirtual

Reserves memory in the update buffer. Called before each iteration.

Implements itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.

Definition at line 417 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ApplyUpdate ( TimeStepType dt )

protectedvirtual

Applies the update buffer values to the active layer and reconstructs the sparse field layers for the next iteration.

Implements itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.

Definition at line 287 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

References itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_Layers.

template<class TOutputImage>

virtual void itk::ImageSource< TOutputImage >::BeforeThreadedGenerateData ( void )

inlineprotectedvirtualinherited

If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.

Definition at line 252 of file itkImageSource.h.

Referenced by otb::RenderingImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData().

void itk::LightObject::BreakOnError ( )

staticinherited

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

Definition at line 149 of file itkLightObject.cxx.

void itk::ProcessObject::CacheInputReleaseDataFlags ( )

protectedvirtualinherited

Cache the state of any ReleaseDataFlag's on the inputs. While the filter is executing, we need to set the ReleaseDataFlag's on the inputs to false in case the current filter is implemented using a mini-pipeline (which will try to release the inputs). After the filter finishes, we restore the state of the ReleaseDataFlag's before the call to ReleaseInputs().

Definition at line 1050 of file itkProcessObject.cxx.

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::TimeStepType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::CalculateChange ( )

protectedvirtual

Traverses the active layer list and calculates the change at these indicies to be applied in the current iteration.

Implements itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.

Definition at line 149 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

References itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_Layers, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_UpdateBuffer, and itk::ConstNeighborhoodIterator< TImage, TBoundaryCondition >::NeedToUseBoundaryConditionOff().

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

virtual ValueType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::CalculateUpdateValue	(	const OutputIndexType &	,
		const TimeStepType &	dt,
		const ValueType &	value,
		const ValueType &	change
	)

inlineprotectedvirtual

This function allows a subclass to override the way in which updates to output values are applied during each iteration. The default simply follows the standard finite difference scheme of scaling the change by the timestep and adding to the value of the previous iteration.

Definition at line 387 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

virtual void itk::ImageToImageFilter< TFeatureImage , TOutputImage >::CallCopyInputRegionToOutputRegion	(	OutputImageRegionType &	destRegion,
		const InputImageRegionType &	srcRegion
	)

protectedvirtualinherited

This function calls the actual region copier to do the mapping from input image space to output image space. It uses a Function object used for dispatching to various routines to copy an input region (start index and size) to an output region. For most filters, this is a trivial copy because most filters require the input dimension to match the output dimension. However, some filters like itk::UnaryFunctorImageFilter can support output images of a higher dimension that the input.

This function object is used by the default implementation of GenerateOutputInformation(). It can also be used in routines like ThreadedGenerateData() where a filter may need to map an input region to an output region.

The default copier uses a "dispatch pattern" to call one of three overloaded functions depending on whether the input and output images are the same dimension, the input is a higher dimension that the output, or the input is of a lower dimension than the output. The use of an overloaded function is required for proper compilation of the various cases.

For the latter two cases, trivial implementations are used. If the input image is a higher dimension than the output, the first portion of the input region is copied to the output region. If the input region is a lower dimension than the output, the input region information is copied into the first portion of the output region and the rest of the output region is set to zero.

If a filter needs a different default behavior, it can override this method.

virtual void itk::ImageToImageFilter< TFeatureImage , TOutputImage >::CallCopyOutputRegionToInputRegion	(	InputImageRegionType &	destRegion,
		const OutputImageRegionType &	srcRegion
	)

protectedvirtualinherited

This function calls the actual region copier to do the mapping from output image space to input image space. It uses a Function object used for dispatching to various routines to copy an output region (start index and size) to an input region. For most filters, this is a trivial copy because most filters require the input dimension to match the output dimension. However, some filters like itk::ExtractImageFilter can support output images of a lower dimension that the input.

This function object can be used by GenerateOutputInformation() to copy the input LargestPossibleRegion to the output LargestPossibleRegion and can also be used in GenerateData or ThreadedGenerateData() where a filter may need to map an output region to an input region.

The default copier uses a "dispatch pattern" to call one of three overloaded functions depending on whether the input and output images are the same dimension, the input is a higher dimension that the output, or the input is of a lower dimension than the output. The use of an overloaded function is required for proper compilation of the various cases.

For the latter two cases, trivial implementations are used. If the input image is a higher dimension than the output, the output region information is copied into the first portion of the input region and the rest of the input region is set to zero. If the input region is a lower dimension than the output, the first portion of the output region is copied to the input region.

If a filter needs a different default behavior, it can override this method. The ExtractImageFilter overrides this function object so that if the input image is a higher dimension than the output image, the filter can control "where" in the input image the output subimage is extracted (as opposed to mapping to first few dimensions of the input).

virtual bool itk::InPlaceImageFilter< TFeatureImage , TOutputImage >::CanRunInPlace ( ) const

inlinevirtualinherited

Can the filter run in place? To do so, the filter's first input and output must have the same dimension and pixel type. This method can be used in conjunction with the InPlace ivar to determine whether a particular use of the filter is really running in place. Some filters may be able to optimize their operation if the InPlace is true and CanRunInPlace is true. CanRunInPlace may also be overridded by InPlaceImageFilter subclasses to fine tune its behavior.

Definition at line 111 of file itkInPlaceImageFilter.h.

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ConstructActiveLayer ( )

protected

Constructs the active layer and initialize the first layers inside and outside of the active layer. The active layer defines the position of the zero level set by its values, which are constrained within a range around zero.

Definition at line 1184 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

References itk::ConstNeighborhoodIterator< TImage, TBoundaryCondition >::GetIndex(), itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_LayerNodeStore, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_Layers, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_StatusImage, and itk::SparseFieldLevelSetNode< TValueType >::m_Value.

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ConstructLayer	(	SparseDataStruct *	sparsePtr,
		StatusType	from,
		StatusType	to
	)

protected

Initializes a layer of the sparse field using a previously initialized layer. Builds the list of nodes in m_Layer[to] using m_Layer[from]. Marks values in the m_StatusImage.

Definition at line 1295 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

References itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_Index, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_LayerNodeStore, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_Layers, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_StatusImage, and itk::SparseFieldLevelSetNode< TValueType >::m_Value.

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::CopyInputToOutput ( )

protectedvirtual

Copies the input to the output image. Processing occurs on the output image, so the data type of the output image determines the precision of the calculations (i.e. double or float). This method overrides the parent class method to do some additional processing.

Implements itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.

Definition at line 92 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

References itk::ImageConstIterator< TImage >::Get(), itk::ImageRegionConstIterator< TImage >::GoToBegin(), itk::ImageConstIterator< TImage >::IsAtEnd(), and itk::ImageRegionIterator< TImage >::Set().

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

virtual::itk::LightObject::Pointer itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::CreateAnother ( void ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

Reimplemented in itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >.

void itk::Object::DebugOff ( ) const

virtualinherited

Turn debugging output off.

Definition at line 253 of file itkObject.cxx.

void itk::Object::DebugOn ( ) const

virtualinherited

Turn debugging output on.

Definition at line 242 of file itkObject.cxx.

void itk::LightObject::Delete ( )

virtualinherited

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Delete a itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C++ delete method will not work with reference counting.

Definition at line 88 of file itkLightObject.cxx.

virtual void itk::ProcessObject::EnlargeOutputRequestedRegion ( DataObject * )

inlinevirtualinherited

Give the process object a chance to indictate that it will produce more output than it was requested to produce. For example, many imaging filters must compute the entire output at once or can only produce output in complete slices. Such filters cannot handle smaller requested regions. These filters must provide an implementation of this method, setting the output requested region to the size they will produce. By default, a process object does not modify the size of the output requested region.

Definition at line 224 of file itkProcessObject.h.

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::GenerateData ( void )

protectedvirtualinherited

This is the default, high-level algorithm for calculating finite difference solutions. It calls virtual methods in its subclasses to implement the major steps of the algorithm.

Reimplemented from itk::ImageSource< TOutputImage >.

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::GenerateInputRequestedRegion ( void )

protectedvirtualinherited

FiniteDifferenceImageFilter2 needs a larger input requested region than the output requested region. As such, we need to provide an implementation for GenerateInputRequestedRegion() in order to inform the pipeline execution model.

: The filter will ask for a padded region to perform its neighborhood calculations. If no such region is available, the boundaries will be handled as described in the FiniteDifferenceFunction defined by the subclass.

See Also: ProcessObject::GenerateInputRequestedRegion()

Reimplemented from itk::ImageToImageFilter< TFeatureImage, TOutputImage >.

void itk::ProcessObject::GenerateOutputInformation ( void )

protectedvirtualinherited

Generate the information decribing the output data. The default implementation of this method will copy information from the input to the output. A filter may override this method if its output will have different information than its input. For instance, a filter that shrinks an image will need to provide an implementation for this method that changes the spacing of the pixels. Such filters should call their superclass' implementation of this method prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.

Default implementation - copy information from first input to all outputs

Examples:: Fusion/BayesianFusionImageFilter.cxx.

Definition at line 1095 of file itkProcessObject.cxx.

Referenced by main().

void itk::ProcessObject::GenerateOutputRequestedRegion ( DataObject * output )

protectedvirtualinherited

Given one output whose requested region has been set, how should the requested regions for the remaining outputs of the process object be set? By default, all the outputs are set to the same requested region. If a filter needs to produce different requested regions for each output, for instance an image processing filter producing several outputs at different resolutions, then that filter may override this method and set the requested regions appropriatedly.

Note that a filter producing multiple outputs of different types is required to override this method. The default implementation can only correctly handle multiple outputs of the same type.

By default we set all the output requested regions to be the same.

Reimplemented in otb::watershed::Segmenter< TInputImage >, itk::watershed::Segmenter< TInputImage >, otb::watershed::Segmenter< InputImageType >, itk::watershed::Segmenter< InputImageType >, itk::watershed::SegmentTreeGenerator< TScalarType >, itk::watershed::SegmentTreeGenerator< ScalarType >, itk::MultiResolutionPyramidImageFilter< TInputImage, TOutputImage >, otb::watershed::Relabeler< TScalarType, TImageDimension >, itk::watershed::Relabeler< TScalarType, TImageDimension >, otb::watershed::Relabeler< ScalarType, itkGetStaticConstMacro(ImageDimension)>, itk::watershed::Relabeler< ScalarType, itkGetStaticConstMacro(ImageDimension)>, otb::watershed::BoundaryResolver< TPixelType, TDimension >, itk::watershed::BoundaryResolver< TPixelType, TDimension >, otb::watershed::EquivalenceRelabeler< TScalarType, TImageDimension >, itk::watershed::EquivalenceRelabeler< TScalarType, TImageDimension >, and itk::RecursiveMultiResolutionPyramidImageFilter< TInputImage, TOutputImage >.

Definition at line 846 of file itkProcessObject.cxx.

virtual const bool& itk::ProcessObject::GetAbortGenerateData ( )

virtualinherited

Get the AbortGenerateData flag for the process object. Process objects may handle premature termination of execution in different ways.

Referenced by itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::IterateThreaderCallback().

Command * itk::Object::GetCommand ( unsigned long tag )

inherited

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

Definition at line 414 of file itkObject.cxx.

References itk::Object::GetCommand(), and NULL.

Referenced by itk::Object::GetCommand().

bool itk::Object::GetDebug ( ) const

inherited

Get the value of the debug flag.

Definition at line 264 of file itkObject.cxx.

Referenced by otb::ogr::ImageReference< double >::GetDebug().

virtual const FiniteDifferenceFunctionPointer itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::GetDifferenceFunction ( const IdCellType & functionIndex ) const

inlinevirtualinherited

This method returns a pointer to a FiniteDifferenceFunction object that will be used by the filter to calculate updates at image pixels.

Parameters

functionIndex Index of difference function to return.

Returns: A FiniteDifferenceObject pointer.

Definition at line 236 of file itkMultiphaseFiniteDifferenceImageFilter.h.

virtual const unsigned int& itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::GetElapsedIterations ( )

virtualinherited

Get the number of elapsed iterations of the filter.

bool itk::Object::GetGlobalWarningDisplay ( )

staticinherited

Get the value of the global debug output control flag.

Definition at line 381 of file itkObject.cxx.

virtual const bool& itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::GetInitializedState ( )

virtualinherited

virtual bool itk::InPlaceImageFilter< TFeatureImage , TOutputImage >::GetInPlace ( ) const

virtualinherited

const InputImageType* itk::ImageToImageFilter< TFeatureImage , TOutputImage >::GetInput ( void )

inherited

const InputImageType* itk::ImageToImageFilter< TFeatureImage , TOutputImage >::GetInput ( unsigned int idx )

inherited

const DataObject * itk::ProcessObject::GetInput ( unsigned int idx ) const

protectedinherited

Definition at line 482 of file itkProcessObject.cxx.

References NULL.

DataObjectPointerArray& itk::ProcessObject::GetInputs ( )

inlineinherited

Return an array with all the inputs of this process object. This is useful for tracing back in the pipeline to construct graphs etc.

Definition at line 108 of file itkProcessObject.h.

Referenced by otb::PipelineMemoryPrintCalculator::EvaluateProcessObjectPrintRecursive().

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

virtual bool itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::GetInterpolateSurfaceLocation ( ) const

virtual

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

virtual ValueType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::GetIsoSurfaceValue ( ) const

virtual

InputImagePointer itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::GetLevelSet ( const IdCellType & i )

inlineinherited

Definition at line 322 of file itkMultiphaseFiniteDifferenceImageFilter.h.

virtual const bool& itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::GetManualReinitialization ( )

virtualinherited

virtual const double& itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::GetMaximumRMSError ( )

virtualinherited

MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void )

inherited

Returns: A reference to this objects MetaDataDictionary.

Warning: This reference may be changed.

Definition at line 532 of file itkObject.cxx.

References NULL.

const MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void ) const

inherited

Returns: A constant reference to this objects MetaDataDictionary.

Definition at line 543 of file itkObject.cxx.

References NULL.

unsigned long itk::Object::GetMTime ( void ) const

virtualinherited

Return this objects modified time.

Return the modification for this object.

Definition at line 286 of file itkObject.cxx.

Referenced by itk::DeformationFieldSource< TOutputImage >::GetMTime(), itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >::GetMTime(), itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), otb::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< TDimension >::GetMTime(), itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime(), otb::Function::NoStretchRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), itk::VTKImageExportBase::PipelineModifiedCallback(), and itk::ProcessObject::UpdateOutputInformation().

MultiThreader* itk::ProcessObject::GetMultiThreader ( )

inlineinherited

Return the multithreader used by this class.

Definition at line 280 of file itkProcessObject.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

virtual const char* itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.

Reimplemented in itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >.

DataObjectPointerArraySizeType itk::ProcessObject::GetNumberOfInputs ( ) const

inlineinherited

Get the size of the input vector. This is merely the size of the input vector, not the number of inputs that have valid DataObject's assigned. Use GetNumberOfValidRequiredInputs() to determine how many inputs are non-null.

Definition at line 118 of file itkProcessObject.h.

Referenced by otb::PipelineMemoryPrintCalculator::EvaluateProcessObjectPrintRecursive().

virtual const unsigned int& itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::GetNumberOfIterations ( void )

virtualinherited

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

virtual unsigned int itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::GetNumberOfLayers ( ) const

virtual

DataObjectPointerArraySizeType itk::ProcessObject::GetNumberOfOutputs ( ) const

inlineinherited

Definition at line 135 of file itkProcessObject.h.

Referenced by otb::PipelineMemoryPrintCalculator::EvaluateProcessObjectPrintRecursive().

virtual const unsigned int& itk::ProcessObject::GetNumberOfRequiredInputs ( )

protectedvirtualinherited

virtual const unsigned int& itk::ProcessObject::GetNumberOfRequiredOutputs ( )

protectedvirtualinherited

virtual const int& itk::ProcessObject::GetNumberOfThreads ( )

virtualinherited

Referenced by itk::BSplineScatteredDataPointSetToImageFilter< TInputPointSet, TOutputImage >::SplitRequestedRegion().

ProcessObject::DataObjectPointerArraySizeType itk::ProcessObject::GetNumberOfValidRequiredInputs ( ) const

virtualinherited

Get the number of valid inputs. This is the number of non-null entries in the input vector in the first NumberOfRequiredInputs slots. This method is used to determine whether the necessary required inputs have been set. Subclasses of ProcessObject may override this implementation if the required inputs are not the first slots in input vector.

Get the number of specified inputs

Reimplemented in itk::MultiResolutionPDEDeformableRegistration< TFixedImage, TMovingImage, TDeformationField, TRealType >, and itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField >.

Definition at line 112 of file itkProcessObject.cxx.

template<class TOutputImage >

ImageSource< TOutputImage >::OutputImageType * itk::ImageSource< TOutputImage >::GetOutput ( void )

inherited

Get the output data of this process object. The output of this function is not valid until an appropriate Update() method has been called, either explicitly or implicitly. Both the filter itself and the data object have Update() methods, and both methods update the data. Here are three ways to use GetOutput() and make sure the data is valid. In these examples, image is a pointer to some Image object, and the particular ProcessObjects involved are filters. The same examples apply to non-image (e.g. Mesh) data as well.

anotherFilter->SetInput( someFilter->GetOutput() );

anotherFilter->Update();

In this situation, someFilter and anotherFilter are said to constitute a pipeline.

image = someFilter->GetOutput();

image->Update();

someFilter->Update();

image = someFilter->GetOutput();

(In the above example, the two lines of code can be in either order.)

Note that Update() is not called automatically except within a pipeline as in the first example. When streaming (using a StreamingImageFilter) is activated, it may be more efficient to use a pipeline than to call Update() once for each filter in turn.

For an image, the data generated is for the requested Region, which can be set using ImageBase::SetRequestedRegion(). By default, the largest possible region is requested.

For Filters which have multiple outputs of different types, the GetOutput() method assumes the output is of OutputImageType. For the GetOutput(unsigned int) method, a dynamic_cast is performed incase the filter has outputs of different types or image types. Derived classes should have names get methods for these outputs.

Definition at line 66 of file itkImageSource.txx.

References itk::ProcessObject::GetOutput().

Referenced by itk::LaplacianSegmentationLevelSetFunction< TImageType, TFeatureImageType >::CalculateSpeedImage(), itk::ImageSeriesReader< TOutputImage >::ComputeMovingDimensionIndex(), otb::ImageSeriesFileReader< Image< TPixel, 2 >, Image< TInternalPixel, 2 > >::GenerateData(), otb::ImageSeriesFileReader< Image< TPixel, 2 >, VectorImage< TInternalPixel, 2 > >::GenerateData(), otb::ImageSeriesFileReader< VectorImage< TPixel, 2 >, VectorImage< TInternalPixel, 2 > >::GenerateData(), and main().

template<class TOutputImage >

ImageSource< TOutputImage >::OutputImageType * itk::ImageSource< TOutputImage >::GetOutput ( unsigned int idx )

inherited

Definition at line 85 of file itkImageSource.txx.

References itk::ProcessObject::GetOutput(), and NULL.

const DataObject * itk::ProcessObject::GetOutput ( unsigned int idx ) const

protectedinherited

Definition at line 454 of file itkProcessObject.cxx.

References NULL.

DataObjectPointerArray& itk::ProcessObject::GetOutputs ( )

inlineinherited

Return an array with all the outputs of this process object. This is useful for tracing forward in the pipeline to contruct graphs etc.

Definition at line 133 of file itkProcessObject.h.

Referenced by otb::PipelineMemoryPrintCalculator::EvaluateProcessObjectPrintRecursive().

virtual const float& itk::ProcessObject::GetProgress ( )

virtualinherited

Get the execution progress of a process object. The progress is a floating number in [0,1] with 0 meaning no progress and 1 meaning the filter has completed execution.

Referenced by itk::WatershedMiniPipelineProgressCommand::Execute(), otb::StreamingImageVirtualWriter< TInputImage >::ObserveSourceFilterProgress(), otb::ImageFileWriter< TInputImage >::ObserveSourceFilterProgress(), itk::LaplacianRecursiveGaussianImageFilter< TInputImage, TOutputImage >::ReportProgress(), and itk::XMLFilterWatcher::ShowProgress().

virtual int itk::LightObject::GetReferenceCount ( ) const

inlinevirtualinherited

Gets the reference count on this object.

Definition at line 105 of file itkLightObject.h.

virtual const bool& itk::ProcessObject::GetReleaseDataBeforeUpdateFlag ( )

virtualinherited

bool itk::ProcessObject::GetReleaseDataFlag ( ) const

virtualinherited

Definition at line 512 of file itkProcessObject.cxx.

virtual const double& itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::GetRMSChange ( )

virtualinherited

virtual const bool& itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::GetUseImageSpacing ( )

virtualinherited

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

virtual ValueType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::GetValueOne ( ) const

protectedvirtual

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

virtual ValueType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::GetValueZero ( ) const

protectedvirtual

static void itk::Object::GlobalWarningDisplayOff ( )

inlinestaticinherited

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

Referenced by itk::OutputWindow::DisplayText(), itk::Win32OutputWindow::PromptText(), and itk::Win32OutputWindow::WndProc().

static void itk::Object::GlobalWarningDisplayOn ( )

inlinestaticinherited

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

template<class TOutputImage >

void itk::ImageSource< TOutputImage >::GraftNthOutput	(	unsigned int	idx,
		DataObject *	output
	)

virtualinherited

Graft the specified data object onto this ProcessObject's idx'th output. This is similar to the GraftOutput method except it allows you to specify which output is affected. The specified index must be a valid output number (less than ProcessObject::GetNumberOfOutputs()). See the GraftOutput for general usage information.

Definition at line 113 of file itkImageSource.txx.

References itk::ProcessObject::GetOutput(), and itk::DataObject::Graft().

template<class TOutputImage >

void itk::ImageSource< TOutputImage >::GraftOutput ( DataObject * output )

virtualinherited

Graft the specified DataObject onto this ProcessObject's output. This method grabs a handle to the specified DataObject's bulk data to used as its output's own bulk data. It also copies the region ivars (RequestedRegion, BufferedRegion, LargestPossibleRegion) and meta-data (Spacing, Origin) from the specified data object into this filter's output data object. Most importantly, however, it leaves the Source ivar untouched so the original pipeline routing is intact. This method is used when a process object is implemented using a mini-pipeline which is defined in its GenerateData() method. The usage is:

// setup the mini-pipeline to process the input to this filter
firstFilterInMiniPipeline->SetInput( this->GetInput() );
// setup the mini-pipeline to calculate the correct regions
// and write to the appropriate bulk data block
lastFilterInMiniPipeline->GraftOutput( this->GetOutput() );
// execute the mini-pipeline
lastFilterInMiniPipeline->Update();
// graft the mini-pipeline output back onto this filter's output.
// this is needed to get the appropriate regions passed back.
this->GraftOutput( lastFilterInMiniPipeline->GetOutput() );

For proper pipeline execution, a filter using a mini-pipeline must implement the GenerateInputRequestedRegion(), GenerateOutputRequestedRegion(), GenerateOutputInformation() and EnlargeOutputRequestedRegion() methods as necessary to reflect how the mini-pipeline will execute (in other words, the outer filter's pipeline mechanism must be consistent with what the mini-pipeline will do).

Definition at line 101 of file itkImageSource.txx.

Referenced by otb::ImageSeriesFileReader< Image< TPixel, 2 >, Image< TInternalPixel, 2 > >::GenerateData(), otb::ImageSeriesFileReader< Image< TPixel, 2 >, VectorImage< TInternalPixel, 2 > >::GenerateData(), otb::ImageSeriesFileReader< VectorImage< TPixel, 2 >, VectorImage< TInternalPixel, 2 > >::GenerateData(), and itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::IterateThreaderCallback().

virtual bool itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::Halt ( )

protectedvirtualinherited

This method returns true when the current iterative solution of the equation has met the criteria to stop solving. Defined by a subclass.

bool itk::Object::HasObserver ( const EventObject & event ) const

inherited

Return true if an observer is registered for this event.

Definition at line 467 of file itkObject.cxx.

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::Initialize ( void )

protectedvirtual

Constructs the sparse field layers and initializes their values.

Reimplemented from itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.

Reimplemented in itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >.

Definition at line 993 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

References itk::ImageRegionConstIterator< TImage >::GoToBegin(), itk::ImageConstIterator< TImage >::IsAtEnd(), itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_LayerNodeStore, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_Layers, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_StatusImage, and itk::ImageRegionIterator< TImage >::Set().

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InitializeActiveLayerValues ( )

protected

Initializes the values of the active layer set.

Definition at line 665 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

References itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_Layers, and itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_UpdateBuffer.

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InitializeBackgroundConstants ( )

protected

Initializes the pixel constants that will be set outside the sparse layer.

Definition at line 1121 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InitializeBackgroundPixels ( )

protectedvirtual

This method pre-processes pixels inside and outside the sparse field layers. The default is to set them to positive and negative values, respectively. This is not necessary as part of the calculations, but produces a more intuitive output for the user.

Definition at line 1143 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

References itk::ImageConstIterator< TImage >::Get(), itk::ImageRegionConstIterator< TImage >::GoToBegin(), itk::ImageConstIterator< TImage >::IsAtEnd(), and itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_StatusImage.

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::InitializedStateOff ( )

virtualinherited

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::InitializedStateOn ( )

virtualinherited

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InitializeIteration ( )

protectedvirtual

This method is optionally defined by a subclass and is called immediately prior to each iterative CalculateChange-ApplyUpdate cycle. It can be used to set global variables needed for the next iteration (ie. average gradient magnitude of the image in anisotropic diffusion functions), or otherwise prepare for the next iteration.

Reimplemented from itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.

Reimplemented in itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >.

Definition at line 965 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

virtual void itk::InPlaceImageFilter< TFeatureImage , TOutputImage >::InPlaceOff ( )

virtualinherited

virtual void itk::InPlaceImageFilter< TFeatureImage , TOutputImage >::InPlaceOn ( )

virtualinherited

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InterpolateSurfaceLocationOff ( )

inline

Definition at line 305 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::InterpolateSurfaceLocationOn ( )

inline

See Get/SetInterpolateSurfaceLocation

Definition at line 303 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

void itk::Object::InvokeEvent ( const EventObject & event )

inherited

Call Execute on all the Commands observing this event id.

Definition at line 446 of file itkObject.cxx.

Referenced by otb::Wrapper::Application::AddProcess(), itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::IterateThreaderCallback(), and itk::VTKImageExportBase::UpdateDataCallback().

void itk::Object::InvokeEvent ( const EventObject & event ) const

inherited

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

Definition at line 457 of file itkObject.cxx.

template<class TOutputImage >

ImageSource< TOutputImage >::DataObjectPointer itk::ImageSource< TOutputImage >::MakeOutput ( unsigned int idx )

virtualinherited

Make a DataObject of the correct type to used as the specified output. Every ProcessObject subclass must be able to create a DataObject that can be used as a specified output. This method is automatically called when DataObject::DisconnectPipeline() is called. DataObject::DisconnectPipeline, disconnects a data object from being an output of its current source. When the data object is disconnected, the ProcessObject needs to construct a replacement output data object so that the ProcessObject is in a valid state. So DataObject::DisconnectPipeline eventually calls ProcessObject::MakeOutput. Note that MakeOutput always returns a SmartPointer to a DataObject. If a subclass of ImageSource has multiple outputs of different types, then that class must provide an implementation of MakeOutput().

Reimplemented from itk::ProcessObject.

Definition at line 55 of file itkImageSource.txx.

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::ManualReinitializationOff ( )

virtualinherited

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::ManualReinitializationOn ( )

virtualinherited

void itk::Object::Modified ( void ) const

virtualinherited

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Make sure this object's modified time is greater than all others.

Definition at line 297 of file itkObject.cxx.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

static Pointer itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::New ( )

static

Method for creation through the object factory.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::operator= ( const Self & )

private

virtual void itk::ImageToImageFilter< TFeatureImage , TOutputImage >::PopBackInput ( )

virtualinherited

Model a stack on the input list by providing a pop back

Reimplemented from itk::ProcessObject.

virtual void itk::ImageToImageFilter< TFeatureImage , TOutputImage >::PopFrontInput ( )

virtualinherited

Reimplemented from itk::ProcessObject.

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::PostProcessOutput ( )

protectedvirtual

This method packages the output(s) into a consistent format. The default implementation produces a volume with the final solution values in the sparse field, and inside and outside values elsewhere as appropriate.

Reimplemented from itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >.

Definition at line 1338 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

References itk::ImageConstIterator< TImage >::Get(), itk::ImageRegionConstIterator< TImage >::GoToBegin(), itk::ImageConstIterator< TImage >::IsAtEnd(), and itk::ImageRegionIterator< TImage >::Value().

void itk::ProcessObject::PrepareOutputs ( )

virtualinherited

An opportunity to deallocate a ProcessObject's bulk data storage. Some filters may wish to reuse existing bulk data storage to avoid unnecessary deallocation/allocation sequences. The default implementation calls Initialize() on each output. DataObject::Initialize() frees its bulk data by default.

Reimplemented in itk::WatershedImageFilter< TInputImage >, otb::WatershedImageFilter< TInputImage >, and otb::GeometriesSource.

Definition at line 864 of file itkProcessObject.cxx.

void itk::LightObject::Print	(	std::ostream &	os,
		Indent	indent = `0`
	)		const

inherited

Cause the object to print itself out.

Avoid DLL boundary problems. This function will be common to all itk objects. It just calls the header/self/trailer virtual print methods, which can be overriden by subclasses (any itk object).

Definition at line 135 of file itkLightObject.cxx.

References itk::Indent::GetNextIndent().

Referenced by itk::operator<<().

void itk::LightObject::PrintHeader	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtualinherited

Define a default print header for all objects.

Definition at line 320 of file itkLightObject.cxx.

bool itk::Object::PrintObservers	(	std::ostream &	os,
		Indent	indent
	)		const

protectedinherited

Definition at line 478 of file itkObject.cxx.

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Chaining method to print an object's instance variables, as well as its superclasses.

Reimplemented from itk::InPlaceImageFilter< TFeatureImage, TOutputImage >.

Definition at line 1401 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

References itk::Indent::GetNextIndent(), itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_LayerNodeStore, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_Layers, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_UpdateBuffer, and itk::SmartPointer< TObjectType >::Print().

void itk::LightObject::PrintTrailer	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtualinherited

Define a default print trailer for all objects.

Definition at line 331 of file itkLightObject.cxx.

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ProcessOutsideList	(	LayerType *	OutsideList,
		StatusType	ChangeToStatus
	)

protected

Definition at line 382 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

References itk::SparseFieldLayer< TNodeType >::Empty(), itk::SparseFieldLayer< TNodeType >::Front(), itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_Layers, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_StatusImage, and itk::SparseFieldLayer< TNodeType >::PopFront().

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ProcessStatusList	(	LayerType *	InputList,
		LayerType *	OutputList,
		StatusType	ChangeToStatus,
		StatusType	SearchForStatus
	)

protected

Definition at line 403 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

References itk::SparseFieldLayer< TNodeType >::Empty(), itk::SparseFieldLayer< TNodeType >::Front(), itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_LayerNodeStore, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_Layers, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_StatusImage, itk::SparseFieldLevelSetNode< TValueType >::m_Value, itk::ConstNeighborhoodIterator< TImage, TBoundaryCondition >::NeedToUseBoundaryConditionOff(), itk::SparseFieldLayer< TNodeType >::PopFront(), and itk::SparseFieldLayer< TNodeType >::PushFront().

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::PropagateAllLayerValues ( )

protected

Adjusts the values associated with all the index layers of the sparse field by propagating out one layer at a time from the active set. This method also takes care of deleting nodes from the layers which have been marked in the status image as having been moved to other layers.

Definition at line 771 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::PropagateFunctionLayerValues ( unsigned int functionIndex )

protected

Definition at line 785 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

References itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_Layers.

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::PropagateLayerValues	(	SparseDataStruct *	sparsePtr,
		StatusType	from,
		StatusType	to,
		StatusType	promote,
		int	InOrOut
	)

protected

Adjusts the values in a single layer "to" using values in a neighboring layer "from". The list of indicies in "to" are traversed and assigned new values appropriately. Any indicies in "to" without neighbors in "from" are moved into the "promote" layer (or deleted if "promote" is greater than the number of layers). "InOrOut" == 1 indicates this propagation is inwards (more negative). "InOrOut" == 2 indicates this propagation is outwards (more positive).

Definition at line 808 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

References itk::SparseFieldLayerIterator< TNodeType >::GetPointer(), itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_Index, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_LayerNodeStore, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_Layers, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_StatusImage, and itk::ConstNeighborhoodIterator< TImage, TBoundaryCondition >::NeedToUseBoundaryConditionOff().

void itk::ProcessObject::PropagateRequestedRegion ( DataObject * output )

virtualinherited

Send the requested region information back up the pipeline (to the filters that preceed this one).

check flag to avoid executing forever if there is a loop

Give the subclass a chance to indicate that it will provide more data then required for the output. This can happen, for example, when a source can only produce the whole output. Although this is being called for a specific output, the source may need to enlarge all outputs.

Give the subclass a chance to define how to set the requested regions for each of its outputs, given this output's requested region. The default implementation is to make all the output requested regions the same. A subclass may need to override this method if each output is a different resolution.

Give the subclass a chance to request a larger requested region on the inputs. This is necessary when, for example, a filter requires more data at the "internal" boundaries to produce the boundary values - such as an image filter that derives a new pixel value by applying some operation to a neighborhood of surrounding original values.

Now that we know the input requested region, propagate this through all the inputs.

Reimplemented in itk::VTKImageImport< TOutputImage >, and itk::StreamingImageFilter< TInputImage, TOutputImage >.

Definition at line 766 of file itkProcessObject.cxx.

void itk::ProcessObject::PropagateResetPipeline ( )

protectedvirtualinherited

Called to allocate the input array. Copies old inputs. Propagate a call to ResetPipeline() up the pipeline. Called only from DataObject.

Propagate the ResetPipeline call

Definition at line 631 of file itkProcessObject.cxx.

virtual void itk::ImageToImageFilter< TFeatureImage , TOutputImage >::PushBackInput ( const InputImageType * image )

virtualinherited

Push/Pop the input of this process object. These methods allow a filter to model its input vector as a queue or stack. These routines may not be appropriate for all filters, especially filters with different types of inputs. These routines follow the semantics of STL.

The routines are useful for applications that need to process "rolling" sets of images. For instance, if an application has 10 images and they need to run a filter on images 1, 2, 3, 4, then run the filter on images 2, 3, 4, 5, then run the filter on images 3, 4, 5, 6, the application can accomplish this by popping an input off the front of the input list and push a new image onto the back of input list. Again, this only makes sense for filters that single type of input.

Other uses are also possible. For a single input filter, pushing and popping inputs allow the application to temporarily replace an input to a filter.

void itk::ImageToImageFilter< TFeatureImage , TOutputImage >::PushBackInput ( const DataObject * input )

inlineprotectedvirtualinherited

PushBackInput(), PushFronInput() in the public section force the input to be the type expected by an ImageToImageFilter. However, these methods end of "hiding" the versions from the superclass (ProcessObject) whose arguments are DataObjects. Here, we re-expose the versions from ProcessObject to avoid warnings about hiding methods from the superclass.

Reimplemented from itk::ProcessObject.

Definition at line 248 of file itkImageToImageFilter.h.

virtual void itk::ImageToImageFilter< TFeatureImage , TOutputImage >::PushFrontInput ( const InputImageType * image )

virtualinherited

void itk::ImageToImageFilter< TFeatureImage , TOutputImage >::PushFrontInput ( const DataObject * input )

inlineprotectedvirtualinherited

Reimplemented from itk::ProcessObject.

Definition at line 250 of file itkImageToImageFilter.h.

void itk::Object::Register ( ) const

virtualinherited

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

Definition at line 309 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::RegisterFactory().

virtual void itk::ProcessObject::ReleaseDataBeforeUpdateFlagOff ( )

virtualinherited

virtual void itk::ProcessObject::ReleaseDataBeforeUpdateFlagOn ( )

virtualinherited

void itk::ProcessObject::ReleaseDataFlagOff ( )

inlineinherited

Definition at line 256 of file itkProcessObject.h.

void itk::ProcessObject::ReleaseDataFlagOn ( )

inlineinherited

Definition at line 255 of file itkProcessObject.h.

virtual void itk::InPlaceImageFilter< TFeatureImage , TOutputImage >::ReleaseInputs ( )

protectedvirtualinherited

InPlaceImageFilter may transfer ownership of the input bulk data to the output object. Once the output object owns the bulk data (done in AllocateOutputs()), the input object must release its hold on the bulk data. ProcessObject::ReleaseInputs() only releases the input bulk data when the user has set the ReleaseDataFlag. InPlaceImageFilter::ReleaseInputs() also releases the input that it has overwritten.

See Also: ProcessObject::ReleaseInputs()

Reimplemented from itk::ProcessObject.

void itk::Object::RemoveAllObservers ( )

inherited

Remove all observers .

Definition at line 435 of file itkObject.cxx.

void itk::ProcessObject::RemoveInput ( DataObject * input )

protectedvirtualinherited

Remove an input.

Removes the first occurence of the given OutputObject from the inputs to this ProcessObject. If it's the last object on the list, shortens the list.

Definition at line 173 of file itkProcessObject.cxx.

void itk::Object::RemoveObserver ( unsigned long tag )

inherited

Remove the observer with this tag value.

Definition at line 425 of file itkObject.cxx.

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), and otb::ImageFileWriter< TInputImage >::Update().

void itk::ProcessObject::RemoveOutput ( DataObject * output )

protectedvirtualinherited

Definition at line 294 of file itkProcessObject.cxx.

void itk::ProcessObject::ResetPipeline ( )

virtualinherited

Reset the pipeline. If an exception is thrown during an Update(), the pipeline may be in an inconsistent state. This method clears the internal state of the pipeline so Update() can be called.

Definition at line 621 of file itkProcessObject.cxx.

Referenced by itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::IterateThreaderCallback().

TimeStepType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::ResolveTimeStep	(	const TimeStepVectorType &	timeStepList,
		const std::vector< bool > &	valid
	)

inlineprotectedinherited

Virtual method for resolving a single time step from a set of time steps returned from processing threads.

Returns: Time step (dt) for the iteration update based on a list of time steps generated from the threaded calculated change method (one for each region processed).

Parameters

timeStepList	The set of time changes compiled from all the threaded calls to ThreadedGenerateData.
valid	The set of flags indicating which of "list" elements are valid
size	The size of "list" and "valid"

The default is to return the minimum value in the list.

void itk::ProcessObject::RestoreInputReleaseDataFlags ( )

protectedvirtualinherited

Restore the cached input ReleaseDataFlags.

Definition at line 1075 of file itkProcessObject.cxx.

virtual void itk::ProcessObject::SetAbortGenerateData ( bool _arg )

virtualinherited

Set the AbortGenerateData flag for the process object. Process objects may handle premature termination of execution in different ways.

void itk::Object::SetDebug ( bool debugFlag ) const

inherited

Set the value of the debug flag. A non-zero value turns debugging on.

Definition at line 275 of file itkObject.cxx.

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::SetDifferenceFunction	(	const IdCellType &	functionIndex,
		FiniteDifferenceFunctionPointer	function
	)

inlinevirtualinherited

This method sets the pointer to a FiniteDifferenceFunction object that will be used by the filter to calculate updates at image pixels.

Parameters

functionIndex	Index of difference function to set.
function	Pointer to difference function to set.

Definition at line 253 of file itkMultiphaseFiniteDifferenceImageFilter.h.

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::SetElapsedIterations ( unsigned int _arg )

virtualinherited

Set the number of elapsed iterations of the filter.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SetFunctionCount ( const IdCellType & n )

inline

Definition at line 308 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

void itk::Object::SetGlobalWarningDisplay ( bool val )

staticinherited

This is a global flag that controls whether any debug, warning or error messages are displayed.

Set the value of the global debug output control flag.

Definition at line 370 of file itkObject.cxx.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::SetInitializedState ( bool _arg )

virtualinherited

Set/Get the state of the filter.

virtual void itk::InPlaceImageFilter< TFeatureImage , TOutputImage >::SetInPlace ( bool _arg )

virtualinherited

In place operation can be turned on and off. Asking for in-place operation, i.e. calling SetInplace(true) or InplaceOn(), will be effective only if CanRunInPlace also returns true. By default CanRunInPlace checks whether the input and output image type match.

virtual void itk::ImageToImageFilter< TFeatureImage , TOutputImage >::SetInput ( const InputImageType * image )

virtualinherited

Set/Get the image input of this process object.

virtual void itk::ImageToImageFilter< TFeatureImage , TOutputImage >::SetInput	(	unsigned	int,
		const TFeatureImage *	image
	)

virtualinherited

Connect one of the operands for pixel-wise addition

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

virtual void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SetInterpolateSurfaceLocation ( bool _arg )

virtual

Get/Set the value of the InterpolateSurfaceLocation flag. This flag tells the solver whether or not to interpolate for the surface location when calculating change at a voxel location. Turned on by default. Some applications may not use this value and can safely turn the flag off.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

virtual void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SetIsoSurfaceValue ( ValueType _arg )

virtual

Set/Get the value of the isosurface to use in the input image.

void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::SetKdTree ( KdTreeType * kdtree )

inlineinherited

Definition at line 340 of file itkMultiphaseFiniteDifferenceImageFilter.h.

void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::SetLevelSet	(	const IdCellType &	i,
		const InputImageType *	levelSet
	)

inlineinherited

Definition at line 299 of file itkMultiphaseFiniteDifferenceImageFilter.h.

void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::SetLookup ( VectorIdCellType lookup )

inlineinherited

Definition at line 335 of file itkMultiphaseFiniteDifferenceImageFilter.h.

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::SetManualReinitialization ( bool _arg )

virtualinherited

Require the filter to be manually reinitialized (by calling SetInitializedStateOff()

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::SetMaximumRMSError ( double _arg )

virtualinherited

Set/Get the maximum error allowed in the solution. This may not be defined for all solvers and its meaning may change with the application.

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary & rhs )

inherited

Returns: Set the MetaDataDictionary

Definition at line 554 of file itkObject.cxx.

References NULL.

Referenced by otb::VectorImage< TPixel, VImageDimension >::CopyInformation(), and otb::Image< TPixel, VImageDimension >::CopyInformation().

void itk::ProcessObject::SetNthInput	(	unsigned int	idx,
		DataObject *	input
	)

protectedvirtualinherited

Protected methods for setting inputs. Subclasses make use of them for setting input.

Set an Input of this filter. This method does Register()/UnRegister() manually to deal with the fact that smart pointers aren't around to do the reference counting.

Reimplemented in itk::ImageToVectorImageFilter< TInputImage >.

Definition at line 210 of file itkProcessObject.cxx.

void itk::ProcessObject::SetNthOutput	(	unsigned int	idx,
		DataObject *	output
	)

protectedvirtualinherited

Protected methods for setting outputs. Subclasses make use of them for getting output.

Set an output of this filter. This method specifically does not do a Register()/UnRegister() because of the desire to break the reference counting loop.

Definition at line 333 of file itkProcessObject.cxx.

References itk::DataObject::ConnectSource().

void itk::ProcessObject::SetNumberOfInputs ( unsigned int num )

protectedinherited

Called to allocate the input array. Copies old inputs.

Called by constructor to set up input array.

Definition at line 96 of file itkProcessObject.cxx.

Referenced by otb::WaveletPacketTransform< TInputImage, TOutputImage, TFilter, Wavelet::FORWARD, TCost >::WaveletPacketTransform(), otb::WaveletPacketTransform< TInputImage, TOutputImage, TFilter, Wavelet::INVERSE, FullyDecomposedWaveletPacketCost< TInputImage > >::WaveletPacketTransform(), otb::WaveletTransform< TInputImage, TOutputImage, TFilter, Wavelet::FORWARD >::WaveletTransform(), and otb::WaveletTransform< TInputImage, TOutputImage, TFilter, Wavelet::INVERSE >::WaveletTransform().

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::SetNumberOfIterations ( unsigned int _arg )

virtualinherited

Set/Get the number of iterations that the filter will run.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

virtual void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SetNumberOfLayers ( unsigned int _arg )

virtual

Set/Get the number of layers to use in the sparse field. Argument is the number of layers on ONE side of the active layer, so the total layers in the sparse field is 2 * NumberOfLayers +1

void itk::ProcessObject::SetNumberOfOutputs ( unsigned int num )

protectedinherited

Called to allocate the output array. Copies old outputs.

Called by constructor to set up output array.

Definition at line 424 of file itkProcessObject.cxx.

Referenced by otb::MeanShiftSmoothingImageFilter< TInputImage, TOutputImage, TKernel, TOutputIterationImage >::MeanShiftSmoothingImageFilter(), otb::WaveletPacketTransform< TInputImage, TOutputImage, TFilter, Wavelet::FORWARD, TCost >::WaveletPacketTransform(), otb::WaveletPacketTransform< TInputImage, TOutputImage, TFilter, Wavelet::INVERSE, FullyDecomposedWaveletPacketCost< TInputImage > >::WaveletPacketTransform(), otb::WaveletTransform< TInputImage, TOutputImage, TFilter, Wavelet::FORWARD >::WaveletTransform(), and otb::WaveletTransform< TInputImage, TOutputImage, TFilter, Wavelet::INVERSE >::WaveletTransform().

virtual void itk::ProcessObject::SetNumberOfRequiredInputs ( unsigned int _arg )

protectedvirtualinherited

Referenced by itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::DeformableSimplexMesh3DFilter(), itk::ExtensionVelocitiesImageFilter< TLevelSet, TAuxValue, VAuxDimension >::ExtensionVelocitiesImageFilter(), itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >::FastMarchingImageFilter(), otb::FillGapsFilter::FillGapsFilter(), otb::ImageToLabelMapWithAttributesFilter< TInputImage, TLabeledImage, TLabel, TLabelObject >::ImageToLabelMapWithAttributesFilter(), itk::ImageToMeshFilter< TInputImage, TOutputMesh >::ImageToMeshFilter(), itk::PasteImageFilter< TInputImage, TSourceImage, TOutputImage >::PasteImageFilter(), otb::WaveletPacketTransform< TInputImage, TOutputImage, TFilter, Wavelet::FORWARD, TCost >::WaveletPacketTransform(), otb::WaveletPacketTransform< TInputImage, TOutputImage, TFilter, Wavelet::INVERSE, FullyDecomposedWaveletPacketCost< TInputImage > >::WaveletPacketTransform(), otb::WaveletTransform< TInputImage, TOutputImage, TFilter, Wavelet::FORWARD >::WaveletTransform(), and otb::WaveletTransform< TInputImage, TOutputImage, TFilter, Wavelet::INVERSE >::WaveletTransform().

virtual void itk::ProcessObject::SetNumberOfRequiredOutputs ( unsigned int _arg )

protectedvirtualinherited

Referenced by itk::AutomaticTopologyMeshSource< TOutputMesh >::AutomaticTopologyMeshSource(), itk::BalloonForceFilter< TInputMesh, TOutputMesh >::BalloonForceFilter(), itk::CoreAtomImageToDistanceMatrixProcess< TSourceImage >::CoreAtomImageToDistanceMatrixProcess(), itk::CoreAtomImageToUnaryCorrespondenceMatrixProcess< TSourceImage >::CoreAtomImageToUnaryCorrespondenceMatrixProcess(), itk::DeformableMesh3DFilter< TInputMesh, TOutputMesh >::DeformableMesh3DFilter(), itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::DeformableSimplexMesh3DFilter(), itk::ExtensionVelocitiesImageFilter< TLevelSet, TAuxValue, VAuxDimension >::ExtensionVelocitiesImageFilter(), itk::FastMarchingExtensionImageFilter< TLevelSet, TAuxValue, VAuxDimension, TSpeedImage >::FastMarchingExtensionImageFilter(), otb::FillGapsFilter::FillGapsFilter(), otb::GeometriesSource::GeometriesSource(), itk::ImageSource< TOutputImage >::ImageSource(), itk::ImageToMeshFilter< TInputImage, TOutputMesh >::ImageToMeshFilter(), itk::MedialNodePairCorrespondenceProcess< TSourceImage >::MedialNodePairCorrespondenceProcess(), itk::MedialNodeTripletCorrespondenceProcess< TSourceImage >::MedialNodeTripletCorrespondenceProcess(), itk::MeshSource< TOutputMesh >::MeshSource(), itk::MultiScaleHessianBasedMeasureImageFilter< TInputImage, THessianImage, TOutputImage >::MultiScaleHessianBasedMeasureImageFilter(), otb::OSMDataToVectorDataGenerator::OSMDataToVectorDataGenerator(), itk::PathSource< TOutputPath >::PathSource(), itk::RegularSphereMeshSource< TOutputMesh >::RegularSphereMeshSource(), otb::watershed::Relabeler< TScalarType, TImageDimension >::Relabeler(), itk::watershed::Relabeler< TScalarType, TImageDimension >::Relabeler(), itk::SimplexMeshAdaptTopologyFilter< TInputMesh, TOutputMesh >::SimplexMeshAdaptTopologyFilter(), itk::SphereMeshSource< TOutputMesh >::SphereMeshSource(), itk::TriangleMeshToSimplexMeshFilter< TInputMesh, TOutputMesh >::TriangleMeshToSimplexMeshFilter(), itk::TwoOutputExampleImageFilter< TImage >::TwoOutputExampleImageFilter(), and itk::VTKPolyDataReader< TOutputMesh >::VTKPolyDataReader().

virtual void itk::ProcessObject::SetNumberOfThreads ( int _arg )

virtualinherited

Get/Set the number of threads to create when executing.

Referenced by itk::CannyEdgeDetectionImageFilter< TInputImage, TOutputImage >::Compute2ndDerivative(), itk::CannyEdgeDetectionImageFilter< TInputImage, TOutputImage >::Compute2ndDerivativePos(), and itk::FiniteDifferenceSparseImageFilter< TInputImageType, TSparseOutputImageType >::PrecalculateChange().

virtual void itk::ProcessObject::SetProgress ( float _arg )

virtualinherited

Set the execution progress of a process object. The progress is a floating number in [0,1] with 0 meaning no progress and 1 meaning the filter has completed execution. The ProgressEvent is NOT invoked.

void itk::Object::SetReferenceCount ( int ref )

virtualinherited

Sets the reference count (use with care)

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 347 of file itkObject.cxx.

virtual void itk::ProcessObject::SetReleaseDataBeforeUpdateFlag ( bool _arg )

virtualinherited

Turn on/off the flags to control whether the bulk data belonging to the outputs of this ProcessObject are released/reallocated during an Update(). In limited memory scenarios, a user may want to force the elements of a pipeline to release any bulk data that is going to be regenerated anyway during an Update() in order to control peak memory allocation. Note that this flag is different from the ReleaseDataFlag. ReleaseDataFlag manages the deallocation of a ProcessObject's bulk output data once that data has been consumed by a downstream ProcessObject. The ReleaseDataBeforeUpdateFlag manages the deallocation/reallocation of bulk data during a pipeline update to control peak memory utilization. Default value is on.

void itk::ProcessObject::SetReleaseDataFlag ( bool flag )

virtualinherited

Turn on/off the flags to control whether the bulk data belonging to the outputs of this ProcessObject are released after being used by a downstream ProcessObject. Default value is off. Another options for controlling memory utilization is the ReleaseDataBeforeUpdateFlag.

Definition at line 528 of file itkProcessObject.cxx.

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::SetRMSChange ( double _arg )

virtualinherited

Set/Get the root mean squared change of the previous iteration. May not be used by all solvers.

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::SetUseImageSpacing ( bool _arg )

virtualinherited

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacingOff.

template<class TOutputImage >

int itk::ImageSource< TOutputImage >::SplitRequestedRegion	(	int	i,
		int	num,
		OutputImageRegionType &	splitRegion
	)

protectedvirtualinherited

Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion". This method is called "num" times. The regions must not overlap. The method returns the number of pieces that the routine is capable of splitting the output RequestedRegion, i.e. return value is less than or equal to "num".

Reimplemented in itk::SignedMaurerDistanceMapImageFilter< TInputImage, TOutputImage >.

Definition at line 138 of file itkImageSource.txx.

Referenced by itk::DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >::ApplyUpdateThreaderCallback(), itk::DenseFiniteDifferenceImageFilter< TInputImage, TOutputImage >::CalculateChangeThreaderCallback(), itk::CannyEdgeDetectionImageFilter< TInputImage, TOutputImage >::Compute2ndDerivativePosThreaderCallback(), and itk::CannyEdgeDetectionImageFilter< TInputImage, TOutputImage >::Compute2ndDerivativeThreaderCallback().

template<class TOutputImage >

void itk::ImageSource< TOutputImage >::ThreadedGenerateData	(	const OutputImageRegionType &	outputRegionForThread,
		int	threadId
	)

protectedvirtualinherited

If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). This superclass will automatically split the output image into a number of pieces, spawn multiple threads, and call ThreadedGenerateData() in each thread. Prior to spawning threads, the BeforeThreadedGenerateData() method is called. After all the threads have completed, the AfterThreadedGenerateData() method is called. If an image processing filter cannot support threading, that filter should provide an implementation of the GenerateData() method instead of providing an implementation of ThreadedGenerateData(). If a filter provides a GenerateData() method as its implementation, then the filter is responsible for allocating the output data. If a filter provides a ThreadedGenerateData() method as its implementation, then the output memory will allocated automatically by this superclass. The ThreadedGenerateData() method should only produce the output specified by "outputThreadRegion" parameter. ThreadedGenerateData() cannot write to any other portion of the output image (as this is responsibility of a different thread).

See Also: GenerateData(), SplitRequestedRegion()

Definition at line 258 of file itkImageSource.txx.

virtual bool itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::ThreadedHalt ( void * )

inlineprotectedvirtualinherited

This method is similar to Halt(), and its default implementation in this class is simply to call Halt(). However, this method takes as a parameter a void pointer to the MultiThreader::ThreadInfoStruct structure. If you override this method instead of overriding Halt, you will be able to get the current thread ID and handle the Halt method accordingly. This is useful if you are doing a lot of processing in Halt that you don't want parallelized. Notice that ThreadedHalt is only called by the multithreaded filters, so you still should implement Halt, just in case a non-threaded filter is used.

Definition at line 467 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<class TOutputImage >

ITK_THREAD_RETURN_TYPE itk::ImageSource< TOutputImage >::ThreaderCallback ( void * arg )

staticprotectedinherited

Static function used as a "callback" by the MultiThreader. The threading library will call this routine for each thread, which will delegate the control to ThreadedGenerateData().

Definition at line 278 of file itkImageSource.txx.

References itk::ImageSource< TOutputImage >::ThreadStruct::Filter, and ITK_THREAD_RETURN_VALUE.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::typedef ( Concept::EqualityComparable< typename TOutputImage::PixelType > )

Begin concept checking This class requires OutputEqualityComparableCheck in the form of (Concept::EqualityComparable<typename TOutputImage::PixelType>)

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::typedef ( Concept::Convertible< double, typename TOutputImage::PixelType > )

This class requires DoubleConvertibleToOutputCheck in the form of (Concept::Convertible<double, typename TOutputImage::PixelType>)

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::typedef ( Concept::OStreamWritable< typename TOutputImage::PixelType > )

This class requires OutputOStreamWritableCheck in the form of (Concept::OStreamWritable<typename TOutputImage::PixelType>)

void itk::Object::UnRegister ( ) const

virtualinherited

Decrease the reference count (release by another object).

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 324 of file itkObject.cxx.

Referenced by itk::Object::New(), and itk::ObjectFactoryBase::UnRegisterFactory().

void itk::ProcessObject::Update ( void )

virtualinherited

Bring this filter up-to-date. Update() checks modified times against last execution times, and re-executes objects if necessary. A side effect of this method is that the whole pipeline may execute in order to bring this filter up-to-date. This method updates the currently prescribed requested region. If no requested region has been set on the output, then the requested region will be set to the largest possible region. Once the requested region is set, Update() will make sure the specified requested region is up-to-date. This is a confusing side effect to users who are just calling Update() on a filter. A first call to Update() will cause the largest possible region to be updated. A second call to Update() will update that same region. If a modification to the upstream pipeline cause a filter to have a different largest possible region, this second call to Update() will not cause the output requested region to be reset to the new largest possible region. Instead, the output requested region will be the same as the last time Update() was called. To have a filter always to produce its largest possible region, users should call UpdateLargestPossibleRegion() instead.

The following methods are used to coordinate the execution of the data processing pipeline.

Definition at line 611 of file itkProcessObject.cxx.

Referenced by otb::ImageSeriesFileReader< Image< TPixel, 2 >, Image< TInternalPixel, 2 > >::GenerateData(), otb::ImageSeriesFileReader< Image< TPixel, 2 >, VectorImage< TInternalPixel, 2 > >::GenerateData(), otb::ImageSeriesFileReader< VectorImage< TPixel, 2 >, VectorImage< TInternalPixel, 2 > >::GenerateData(), itk::AutoCropLabelMapFilter< TInputImage >::GenerateOutputInformation(), itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::GenerateOutputInformation(), and itk::VoronoiSegmentationImageFilterBase< TInputImage, TOutputImage, TBinaryPriorImage >::RunSegmentOneStep().

template<class TInputImage , class TFeatureImage , class TOutputImage , class TFunction , typename TIdCell >

void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::UpdateActiveLayerValues	(	TimeStepType	dt,
		LayerType *	StatusUpList,
		LayerType *	StatusDownList
	)

protected

Updates the active layer values using m_UpdateBuffer. Also creates an "up" and "down" list for promotion/demotion of indices leaving the active set.

Definition at line 471 of file itkMultiphaseSparseFiniteDifferenceImageFilter.txx.

References itk::SparseFieldLayerIterator< TNodeType >::GetPointer(), itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_LayerNodeStore, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_Layers, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_StatusImage, itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::SparseDataStruct::m_UpdateBuffer, itk::SparseFieldLevelSetNode< TValueType >::m_Value, itk::ConstNeighborhoodIterator< TImage, TBoundaryCondition >::NeedToUseBoundaryConditionOff(), and itk::SparseFieldLayer< TNodeType >::PushFront().

void itk::ProcessObject::UpdateLargestPossibleRegion ( )

virtualinherited

Like Update(), but sets the output requested region to the largest possible region for the output. This is the method users should call if they want the entire dataset to be processed. If a user wants to update the same output region as a previous call to Update() or a previous call to UpdateLargestPossibleRegion(), then they should call the method Update().

Definition at line 1120 of file itkProcessObject.cxx.

void itk::ProcessObject::UpdateOutputData ( DataObject * output )

virtualinherited

Actually generate new output

prevent chasing our tail

Prepare all the outputs. This may deallocate previous bulk data.

Propagate the update call - make sure everything we might rely on is up-to-date Must call PropagateRequestedRegion before UpdateOutputData if multiple inputs since they may lead back to the same data object.

Cache the state of any ReleaseDataFlag's on the inputs. While the filter is executing, we need to set the ReleaseDataFlag's on the inputs to false in case the current filter is implemented using a mini-pipeline (which will try to release the inputs). After the filter finishes, we restore the state of the ReleaseDataFlag's before the call to ReleaseInputs().

Tell all Observers that the filter is starting

GenerateData this object - we have not aborted yet, and our progress before we start to execute is 0.0.

Count the number of required inputs which have been assigned

If we ended due to aborting, push the progress up to 1.0 (since it probably didn't end there)

Notify end event observers

Now we have to mark the data as up to date.

Restore the state of any input ReleaseDataFlags

Release any inputs if marked for release

Reimplemented in itk::StreamingImageFilter< TInputImage, TOutputImage >.

Definition at line 908 of file itkProcessObject.cxx.

void itk::ProcessObject::UpdateOutputInformation ( void )

virtualinherited

Update the information decribing the output data. This method transverses up the pipeline gathering modified time information. On the way back down the pipeline, this method calls GenerateOutputInformation() to set any necessary information about the output data objects. For instance, a filter that shrinks an image will need to provide an implementation for GenerateOutputInformation() that changes the spacing of the pixels. Such filters should call their superclass' implementation of GenerateOutputInformation prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.

Watch out for loops in the pipeline

Since we are in a loop, we will want to update. But if we don't modify this filter, then we will not execute because our OutputInformationMTime will be more recent than the MTime of our output.

We now wish to set the PipelineMTime of each output DataObject to the largest of this ProcessObject's MTime, all input DataObject's PipelineMTime, and all input's MTime. We begin with the MTime of this ProcessObject.

Loop through the inputs

Propagate the UpdateOutputInformation call

What is the PipelineMTime of this input? Compare this against our current computation to find the largest one.

Pipeline MTime of the input does not include the MTime of the data object itself. Factor these mtimes into the next PipelineMTime

Call GenerateOutputInformation for subclass specific information. Since UpdateOutputInformation propagates all the way up the pipeline, we need to be careful here to call GenerateOutputInformation only if necessary. Otherwise, we may cause this source to be modified which will cause it to execute again on the next update.

Keep track of the last time GenerateOutputInformation() was called

Reimplemented in otb::watershed::Segmenter< TInputImage >, itk::watershed::Segmenter< TInputImage >, otb::watershed::Segmenter< InputImageType >, itk::watershed::Segmenter< InputImageType >, and itk::VTKImageImport< TOutputImage >.

Definition at line 664 of file itkProcessObject.cxx.

References itk::Object::GetMTime(), itk::DataObject::GetPipelineMTime(), itk::DataObject::SetPipelineMTime(), and itk::DataObject::UpdateOutputInformation().

Referenced by itk::VTKImageExportBase::UpdateInformationCallback().

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

virtual void itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::UpdatePixel	(	unsigned int	,
		unsigned int	,
		NeighborhoodIterator< InputImageType > &	,
		ValueType &	,
		bool &
	)

inlineprotectedvirtual

Definition at line 479 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

void itk::ProcessObject::UpdateProgress ( float amount )

inherited

Update the progress of the process object.

Sets the Progress ivar to amount and invokes any observers for the ProgressEvent. The parameter amount should be in [0,1] and is the cumulative (not incremental) progress.

Update the progress of the process object. If a ProgressMethod exists, execute it. Then set the Progress ivar to amount. The parameter amount should range between (0,1).

Definition at line 500 of file itkProcessObject.cxx.

Referenced by itk::WatershedMiniPipelineProgressCommand::Execute(), otb::otb_UpdateGDALProgress(), itk::ProgressReporter::ProgressReporter(), and itk::ProgressReporter::~ProgressReporter().

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::UseImageSpacingOff ( )

virtualinherited

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::UseImageSpacingOn ( )

virtualinherited

Member Data Documentation

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

const unsigned int itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ImageDimension = Superclass::ImageDimension

static

Definition at line 199 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

const unsigned int itk::InPlaceImageFilter< TFeatureImage , TOutputImage >::InputImageDimension

staticinherited

ImageDimension constants

Definition at line 90 of file itkInPlaceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

ValueType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_BackgroundValue

protected

The value of the pixel outside the sparse layers

Definition at line 527 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

bool itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_BoundsCheckingActive

private

This flag is true when methods need to check boundary conditions and false when methods do not need to check for boundary conditions.

Definition at line 546 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

double itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_ConstantGradientValue = 1.0

staticprotected

The constant gradient to maintain between isosurfaces in the sparse-field of the level-set image. This value defaults to 1.0

Definition at line 484 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

unsigned int itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_CurrentFunctionIndex

private

Definition at line 539 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

std::vector< FiniteDifferenceFunctionPointer > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::m_DifferenceFunctions

protectedinherited

The function that will be used in calculating updates for each pixel.

Definition at line 408 of file itkMultiphaseFiniteDifferenceImageFilter.h.

unsigned int itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::m_ElapsedIterations

protectedinherited

Definition at line 402 of file itkMultiphaseFiniteDifferenceImageFilter.h.

IdCellType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::m_FunctionCount

protectedinherited

Definition at line 397 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

bool itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_InterpolateSurfaceLocation

protected

This flag tells the solver whether or not to interpolate for the actual surface location when calculating change at each active layer node. By default this is turned on. Subclasses which do not sample propagation (speed), advection, or curvature terms should turn this flag off.

Definition at line 533 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

ValueType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_IsoSurfaceValue

protected

The value in the input which represents the isosurface of interest.

Definition at line 524 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

KdTreePointer itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::m_KdTree

protectedinherited

Definition at line 400 of file itkMultiphaseFiniteDifferenceImageFilter.h.

std::vector< InputImagePointer > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::m_LevelSet

protectedinherited

Definition at line 398 of file itkMultiphaseFiniteDifferenceImageFilter.h.

VectorIdCellType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::m_Lookup

protectedinherited

Definition at line 399 of file itkMultiphaseFiniteDifferenceImageFilter.h.

double itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::m_MaximumRMSError

protectedinherited

Definition at line 403 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

NeighborListType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_NeighborList

protected

Connectivity information for examining neighbor pixels.

Definition at line 378 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

unsigned int itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::m_NumberOfIterations

protectedinherited

Definition at line 405 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

unsigned int itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_NumberOfLayers

protected

The number of layers to use in the sparse field. Sparse field will consist of m_NumberOfLayers layers on both sides of a single active layer. This active layer is the interface of interest, i.e. the zero level set.

Definition at line 521 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

TimeStamp itk::ProcessObject::m_OutputInformationMTime

protectedinherited

Time when GenerateOutputInformation was last called.

Definition at line 421 of file itkProcessObject.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

std::vector< ValueType > itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_PixelDistance

protected

Stores the distance between pixels in the neighborhood iterator.

Definition at line 381 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

InternalReferenceCountType itk::LightObject::m_ReferenceCount

mutableprotectedinherited

Number of uses of this object by other objects.

Definition at line 141 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock

mutableprotectedinherited

Mutex lock to protect modification to the reference count

Definition at line 144 of file itkLightObject.h.

double itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::m_RMSChange

protectedinherited

Definition at line 404 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

unsigned int itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_RMSCounter

private

Definition at line 542 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

double itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_RMSSum

private

Definition at line 541 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

std::vector< SparseDataStruct* > itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_SparseData

protected

Definition at line 516 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

const MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::StatusType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_StatusActiveChangingDown = -3

staticprotected

Special status value which indicates a pending change to a more negative sparse field.

Definition at line 506 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

const MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::StatusType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_StatusActiveChangingUp = -2

staticprotected

Special status value which indicates a pending change to a more positive sparse field.

Definition at line 502 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

const MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::StatusType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_StatusBoundaryPixel = -4

staticprotected

Special status value which indicates a pixel is on the boundary of the image

Definition at line 510 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

const MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::StatusType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_StatusChanging = -1

staticprotected

Special status value which indicates pending change to another sparse field layer.

Definition at line 498 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

const MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::StatusType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_StatusNull

staticprotected

Initial value:

= NumericTraits<                    typename
MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::
StatusType >::NonpositiveMin()

Special status value used as a default for indicies which have no meaningful status.

Definition at line 514 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

bool itk::ProcessObject::m_Updating

protectedinherited

These ivars are made protected so filters like itkStreamingImageFilter can access them directly. This flag indicates when the pipeline is executing. It prevents infinite recursion when pipelines have loops.

Definition at line 418 of file itkProcessObject.h.

bool itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction , TIdCell >::m_UseImageSpacing

protectedinherited

Control whether derivatives use spacing of the input image in its calculation.

Definition at line 412 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

const MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ValueType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_ValueOne

staticprotected

Initial value:

= NumericTraits<                   typename
MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >
::ValueType >::One

Multiplicative identity of the ValueType.

Definition at line 491 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>

const MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::ValueType itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::m_ValueZero

staticprotected

Initial value:

= NumericTraits<                   typename
MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >::
ValueType>::Zero

Additive identity of the ValueType.

Definition at line 494 of file itkMultiphaseSparseFiniteDifferenceImageFilter.h.

const unsigned int itk::InPlaceImageFilter< TFeatureImage , TOutputImage >::OutputImageDimension

staticinherited

Definition at line 92 of file itkInPlaceImageFilter.h.

The documentation for this class was generated from the following files:

Classes

Public Types

Public Member Functions

Static Public Member Functions

Static Public Attributes

Protected Types

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Static Protected Attributes

Private Member Functions

Private Attributes

Detailed Description

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int> class itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<class TInputImage, class TFeatureImage, class TOutputImage, class TFunction, typename TIdCell = unsigned int>
class itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >