itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage > Class Template Reference

Computes similarity between two binary objects to be registered. More...

#include <itkKappaStatisticImageToImageMetric.h>

Inheritance diagram for itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >:

Collaboration diagram for itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >:

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::ParametersValueType	CoordinateRepresentationType
typedef Superclass::ParametersValueType	CoordinateRepresentationType
typedef Superclass::DerivativeType	DerivativeType
typedef Superclass::FixedImageConstPointer	FixedImageConstPointer
typedef std::vector < FixedImageIndexType >	FixedImageIndexContainer
typedef FixedImageType::IndexType	FixedImageIndexType
typedef FixedImageIndexType::IndexValueType	FixedImageIndexValueType
typedef FixedImageMaskType::ConstPointer	FixedImageMaskConstPointer
typedef FixedImageMaskType::ConstPointer	FixedImageMaskConstPointer
typedef FixedImageMaskType::Pointer	FixedImageMaskPointer
typedef FixedImageMaskType::Pointer	FixedImageMaskPointer
typedef SpatialObject < itkGetStaticConstMacro(FixedImageDimension) >	FixedImageMaskType
typedef SpatialObject < itkGetStaticConstMacro(FixedImageDimension) >	FixedImageMaskType
typedef TFixedImage::PixelType	FixedImagePixelType
typedef TransformType::InputPointType	FixedImagePointType
typedef Superclass::FixedImageRegionType	FixedImageRegionType
typedef Superclass::FixedImageType	FixedImageType
typedef GradientImageFilterType::Pointer	GradientImageFilterPointer
typedef GradientImageFilterType::Pointer	GradientImageFilterPointer
typedef GradientRecursiveGaussianImageFilter < MovingImageType, GradientImageType >	GradientImageFilterType
typedef GradientRecursiveGaussianImageFilter < MovingImageType, GradientImageType >	GradientImageFilterType
typedef SmartPointer < GradientImageType >	GradientImagePointer
typedef SmartPointer < GradientImageType >	GradientImagePointer
typedef Superclass::GradientImageType	GradientImageType
typedef Superclass::GradientPixelType	GradientPixelType
typedef Superclass::InputPointType	InputPointType
typedef InterpolatorType::Pointer	InterpolatorPointer
typedef InterpolatorType::Pointer	InterpolatorPointer
typedef InterpolateImageFunction < MovingImageType, CoordinateRepresentationType >	InterpolatorType
typedef InterpolateImageFunction < MovingImageType, CoordinateRepresentationType >	InterpolatorType
typedef Superclass::MeasureType	MeasureType
typedef Superclass::MovingImageConstPointer	MovingImageConstPointer
typedef MovingImageType::IndexType	MovingImageIndexType
typedef MovingImageMaskType::ConstPointer	MovingImageMaskConstPointer
typedef MovingImageMaskType::ConstPointer	MovingImageMaskConstPointer
typedef MovingImageMaskType::Pointer	MovingImageMaskPointer
typedef MovingImageMaskType::Pointer	MovingImageMaskPointer
typedef SpatialObject < itkGetStaticConstMacro(MovingImageDimension) >	MovingImageMaskType
typedef SpatialObject < itkGetStaticConstMacro(MovingImageDimension) >	MovingImageMaskType
typedef TMovingImage::PixelType	MovingImagePixelType
typedef TMovingImage::PixelType	MovingImagePixelType
typedef TransformType::OutputPointType	MovingImagePointType
typedef Superclass::MovingImageType	MovingImageType
typedef MultiThreader	MultiThreaderType
typedef Superclass::OutputPointType	OutputPointType
typedef Superclass::ParametersType	ParametersType
typedef Superclass::ParametersType	ParametersType
typedef double	ParametersValueType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RealType	RealType
typedef KappaStatisticImageToImageMetric	Self
typedef ImageToImageMetric < TFixedImage, TMovingImage >	Superclass
typedef Superclass::TransformJacobianType	TransformJacobianType
typedef Superclass::TransformParametersType	TransformParametersType
typedef Superclass::TransformPointer	TransformPointer
typedef Superclass::TransformType	TransformType

Public Member Functions
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	ComplementOff ()
virtual void	ComplementOn ()
void	ComputeGradient ()
virtual void	ComputeGradientOff ()
virtual void	ComputeGradientOff ()
virtual void	ComputeGradientOn ()
virtual void	ComputeGradientOn ()
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual void	DebugOff () const
virtual void	DebugOn () const
virtual void	Delete ()
Command *	GetCommand (unsigned long tag)
virtual bool	GetComplement () const
virtual const bool &	GetComputeGradient ()
virtual const bool &	GetComputeGradient ()
bool	GetDebug () const
void	GetDerivative (const TransformParametersType &, DerivativeType &derivative) const
virtual const FixedImageType *	GetFixedImage ()
virtual const FixedImageType *	GetFixedImage ()
virtual const FixedImageMaskType *	GetFixedImageMask ()
virtual const FixedImageMaskType *	GetFixedImageMask ()
virtual const FixedImageRegionType &	GetFixedImageRegion ()
virtual const FixedImageRegionType &	GetFixedImageRegion ()
virtual const FixedImagePixelType &	GetFixedImageSamplesIntensityThreshold ()
virtual RealType	GetForegroundValue () const
virtual const GradientImageType *	GetGradientImage ()
virtual const GradientImageType *	GetGradientImage ()
virtual const InterpolatorType *	GetInterpolator ()
virtual const InterpolatorType *	GetInterpolator ()
MetaDataDictionary &	GetMetaDataDictionary (void)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
virtual const MovingImageType *	GetMovingImage ()
virtual const MovingImageType *	GetMovingImage ()
virtual const MovingImageMaskType *	GetMovingImageMask ()
virtual const MovingImageMaskType *	GetMovingImageMask ()
virtual unsigned long	GetMTime () const
virtual const char *	GetNameOfClass () const
virtual const unsigned long &	GetNumberOfFixedImageSamples ()
unsigned long	GetNumberOfMovingImageSamples (void)
unsigned int	GetNumberOfParameters (void) const
unsigned int	GetNumberOfParameters (void) const
virtual const unsigned long &	GetNumberOfPixelsCounted ()
virtual const unsigned long &	GetNumberOfPixelsCounted ()
unsigned long	GetNumberOfSpatialSamples (void)
virtual const unsigned int &	GetNumberOfThreads ()
virtual int	GetReferenceCount () const
virtual const MultiThreaderType *	GetThreader ()
const TransformPointer *	GetThreaderTransform ()
virtual const TransformType *	GetTransform ()
virtual const TransformType *	GetTransform ()
virtual const bool &	GetUseAllPixels ()
virtual const bool &	GetUseCachingOfBSplineWeights ()
virtual const bool &	GetUseFixedImageIndexes ()
virtual const bool &	GetUseFixedImageSamplesIntensityThreshold ()
virtual const bool &	GetUseSequentialSampling ()
MeasureType	GetValue (const TransformParametersType &parameters) const
virtual void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const
void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const
bool	HasObserver (const EventObject &event) const
virtual void	Initialize (void) throw ( ExceptionObject )
virtual void	Initialize (void) throw ( ExceptionObject )
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	MultiThreadingInitialize (void) throw ( ExceptionObject )
void	Print (std::ostream &os, Indent indent=0) const
virtual void	Register () const
void	ReinitializeSeed ()
void	ReinitializeSeed (int seed)
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
virtual void	SetComplement (bool _arg)
virtual void	SetComputeGradient (bool _arg)
virtual void	SetComputeGradient (bool _arg)
void	SetDebug (bool debugFlag) const
virtual void	SetFixedImage (const FixedImageType *_arg)
virtual void	SetFixedImage (const FixedImageType *_arg)
void	SetFixedImageIndexes (const FixedImageIndexContainer &indexes)
virtual void	SetFixedImageMask (FixedImageMaskType *_arg)
virtual void	SetFixedImageMask (const FixedImageMaskType *mask)
virtual void	SetFixedImageMask (FixedImageMaskType *_arg)
virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)
virtual void	SetFixedImageRegion (FixedImageRegionType _arg)
void	SetFixedImageRegion (const FixedImageRegionType reg)
void	SetFixedImageSamplesIntensityThreshold (const FixedImagePixelType &thresh)
virtual void	SetForegroundValue (RealType _arg)
virtual void	SetInterpolator (InterpolatorType *_arg)
virtual void	SetInterpolator (InterpolatorType *_arg)
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetMovingImage (const MovingImageType *_arg)
virtual void	SetMovingImage (const MovingImageType *_arg)
virtual void	SetMovingImageMask (MovingImageMaskType *_arg)
virtual void	SetMovingImageMask (const MovingImageMaskType *mask)
virtual void	SetMovingImageMask (MovingImageMaskType *_arg)
virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)
virtual void	SetNumberOfFixedImageSamples (unsigned long numSamples)
void	SetNumberOfSpatialSamples (unsigned long num)
void	SetNumberOfThreads (unsigned int numberOfThreads)
virtual void	SetReferenceCount (int)
virtual void	SetTransform (TransformType *_arg)
virtual void	SetTransform (TransformType *_arg)
void	SetTransformParameters (const ParametersType &parameters) const
void	SetTransformParameters (const ParametersType &parameters) const
void	SetUseAllPixels (bool useAllPixels)
virtual void	SetUseCachingOfBSplineWeights (bool _arg)
void	SetUseFixedImageIndexes (bool useIndex)
void	SetUseFixedImageSamplesIntensityThreshold (bool useThresh)
void	SetUseSequentialSampling (bool sequentialSampling)
virtual void	UnRegister () const
void	UseAllPixelsOff (void)
void	UseAllPixelsOn (void)
virtual void	UseCachingOfBSplineWeightsOff ()
virtual void	UseCachingOfBSplineWeightsOn ()

Static Public Member Functions
static void	BreakOnError ()
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool flag)

Static Public Attributes
static const unsigned int	FixedImageDimension = TFixedImage::ImageDimension
static const unsigned int	MovingImageDimension = TMovingImage::ImageDimension

Protected Types
typedef std::vector< bool >	BooleanArrayType
typedef BSplineInterpolateImageFunction < MovingImageType, CoordinateRepresentationType >	BSplineInterpolatorType
typedef FixedArray< unsigned long,::itk::GetImageDimension < FixedImageType > ::ImageDimension >	BSplineParametersOffsetType
typedef BSplineTransformType::ParameterIndexArrayType	BSplineTransformIndexArrayType
typedef Array2D< IndexValueType >	BSplineTransformIndicesArrayType
typedef BSplineDeformableTransform < CoordinateRepresentationType,::itk::GetImageDimension < FixedImageType > ::ImageDimension, itkGetStaticConstMacro(DeformationSplineOrder) >	BSplineTransformType
typedef Array2D< WeightsValueType >	BSplineTransformWeightsArrayType
typedef BSplineTransformType::WeightsType	BSplineTransformWeightsType
typedef CentralDifferenceImageFunction < MovingImageType, CoordinateRepresentationType >	DerivativeFunctionType
typedef std::vector < FixedImageSamplePoint >	FixedImageSampleContainer
typedef CovariantVector < double, itkGetStaticConstMacro(MovingImageDimension) >	ImageDerivativesType
typedef BSplineTransformIndexArrayType::ValueType	IndexValueType
typedef int	InternalReferenceCountType
typedef std::vector < MovingImagePointType >	MovingImagePointArrayType
typedef BSplineTransformWeightsType::ValueType	WeightsValueType

Protected Member Functions
	KappaStatisticImageToImageMetric ()
virtual	~KappaStatisticImageToImageMetric ()
virtual void	ComputeImageDerivatives (const MovingImagePointType &mappedPoint, ImageDerivativesType &gradient, unsigned int threadID) const
void	GetValueAndDerivativeMultiThreadedInitiate (void) const
void	GetValueAndDerivativeMultiThreadedPostProcessInitiate (void) const
void	GetValueAndDerivativeMultiThreadedPreProcessInitiate (void) const
virtual void	GetValueAndDerivativeThread (unsigned int threadID) const
virtual void	GetValueAndDerivativeThreadPostProcess (unsigned int, bool) const
virtual void	GetValueAndDerivativeThreadPreProcess (unsigned int, bool) const
virtual bool	GetValueAndDerivativeThreadProcessSample (unsigned int, unsigned long, const MovingImagePointType &, double, const ImageDerivativesType &) const
void	GetValueMultiThreadedInitiate (void) const
void	GetValueMultiThreadedPostProcessInitiate (void) const
void	GetValueMultiThreadedPreProcessInitiate (void) const
virtual void	GetValueThread (unsigned int threadID) const
virtual void	GetValueThreadPostProcess (unsigned int, bool) const
virtual void	GetValueThreadPreProcess (unsigned int, bool) const
virtual bool	GetValueThreadProcessSample (unsigned int, unsigned long, const MovingImagePointType &, double) const
virtual void	PreComputeTransformValues (void)
virtual void	PrintHeader (std::ostream &os, Indent indent) const
bool	PrintObservers (std::ostream &os, Indent indent) const
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual void	SampleFixedImageIndexes (FixedImageSampleContainer &samples) const
virtual void	SampleFixedImageRegion (FixedImageSampleContainer &samples) const
virtual void	SampleFullFixedImageRegion (FixedImageSampleContainer &samples) const
virtual void	SynchronizeTransforms () const
virtual void	TransformPoint (unsigned int sampleNumber, MovingImagePointType &mappedPoint, bool &sampleWithinSupportRegion, double &movingImageValue, unsigned int threadID) const
virtual void	TransformPointWithDerivatives (unsigned int sampleNumber, MovingImagePointType &mappedPoint, bool &sampleWithinSupportRegion, double &movingImageValue, ImageDerivativesType &gradient, unsigned int threadID) const

Static Protected Member Functions
static ITK_THREAD_RETURN_TYPE	GetValueAndDerivativeMultiThreaded (void *arg)
static ITK_THREAD_RETURN_TYPE	GetValueAndDerivativeMultiThreadedPostProcess (void *arg)
static ITK_THREAD_RETURN_TYPE	GetValueAndDerivativeMultiThreadedPreProcess (void *arg)
static ITK_THREAD_RETURN_TYPE	GetValueMultiThreaded (void *arg)
static ITK_THREAD_RETURN_TYPE	GetValueMultiThreadedPostProcess (void *arg)
static ITK_THREAD_RETURN_TYPE	GetValueMultiThreadedPreProcess (void *arg)

Protected Attributes
BSplineInterpolatorType::Pointer	m_BSplineInterpolator
BSplineParametersOffsetType	m_BSplineParametersOffset
MovingImagePointArrayType	m_BSplinePreTransformPointsArray
BSplineTransformType::Pointer	m_BSplineTransform
BSplineTransformIndexArrayType	m_BSplineTransformIndices
BSplineTransformIndicesArrayType	m_BSplineTransformIndicesArray
BSplineTransformWeightsType	m_BSplineTransformWeights
BSplineTransformWeightsArrayType	m_BSplineTransformWeightsArray
bool	m_ComputeGradient
DerivativeFunctionType::Pointer	m_DerivativeCalculator
FixedImageConstPointer	m_FixedImage
FixedImageIndexContainer	m_FixedImageIndexes
FixedImageMaskPointer	m_FixedImageMask
FixedImageMaskConstPointer	m_FixedImageMask
FixedImageSampleContainer	m_FixedImageSamples
FixedImagePixelType	m_FixedImageSamplesIntensityThreshold
GradientImagePointer	m_GradientImage
InterpolatorPointer	m_Interpolator
bool	m_InterpolatorIsBSpline
MovingImageConstPointer	m_MovingImage
MovingImageMaskPointer	m_MovingImageMask
MovingImageMaskConstPointer	m_MovingImageMask
unsigned long	m_NumberOfFixedImageSamples
unsigned long	m_NumberOfParameters
unsigned long	m_NumberOfPixelsCounted
unsigned int	m_NumberOfThreads
unsigned long	m_NumBSplineWeights
ParametersType	m_Parameters
int	m_RandomSeed
InternalReferenceCountType	m_ReferenceCount
SimpleFastMutexLock	m_ReferenceCountLock
bool	m_ReseedIterator
MultiThreaderType::Pointer	m_Threader
BSplineTransformIndexArrayType *	m_ThreaderBSplineTransformIndices
BSplineTransformWeightsType *	m_ThreaderBSplineTransformWeights
unsigned int *	m_ThreaderNumberOfMovingImageSamples
MultiThreaderParameterType	m_ThreaderParameter
TransformPointer *	m_ThreaderTransform
TransformPointer	m_Transform
bool	m_TransformIsBSpline
bool	m_UseAllPixels
bool	m_UseCachingOfBSplineWeights
bool	m_UseFixedImageIndexes
bool	m_UseFixedImageSamplesIntensityThreshold
bool	m_UseSequentialSampling
BooleanArrayType	m_WithinBSplineSupportRegionArray
bool	m_WithinThreadPostProcess
bool	m_WithinThreadPreProcess

Static Protected Attributes
static const unsigned int	DeformationSplineOrder = 3

Private Member Functions
	KappaStatisticImageToImageMetric (const Self &)
void	operator= (const Self &)

Private Attributes
bool	m_Complement
RealType	m_ForegroundValue

Detailed Description

template<class TFixedImage, class TMovingImage>
class itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >

Computes similarity between two binary objects to be registered.

This Class is templated over the type of the fixed and moving images to be compared. The metric here is designed for matching pixels in two images with the same exact value. Only one value can be considered (the default is 255) and can be specified with the SetForegroundValue method. In the computation of the metric, only foreground pixels are considered. The metric value is given by 2*|A&B|/(|A|+|B|), where A is the foreground region in the moving image, B is the foreground region in the fixed image, & is intersection, and |.| indicates the area of the enclosed set. The metric is described in "Morphometric Analysis of White Matter Lesions in MR Images: Method and Validation", A. P. Zijdenbos, B. M. Dawant, R. A. Margolin, A. C. Palmer.

This metric is especially useful when considering the similarity between binary images. Given the nature of binary images, a nearest neighbor interpolator is the preferred interpolator.

Metric values range from 0.0 (no foreground alignment) to 1.0 (perfect foreground alignment). When dealing with optimizers that can only minimize a metric, use the ComplementOn() method.

Definition at line 52 of file itkKappaStatisticImageToImageMetric.h.

Member Typedef Documentation

template<class TFixedImage , class TMovingImage >

typedef std::vector<bool> itk::ImageToImageMetric< TFixedImage, TMovingImage >::BooleanArrayType

protectedinherited

Definition at line 445 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef BSplineInterpolateImageFunction<MovingImageType, CoordinateRepresentationType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::BSplineInterpolatorType

protectedinherited

If a BSplineInterpolationFunction is used, this class obtain image derivatives from the BSpline interpolator. Otherwise, image derivatives are computed using central differencing.

Definition at line 456 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef FixedArray< unsigned long, ::itk::GetImageDimension<FixedImageType>::ImageDimension > itk::ImageToImageMetric< TFixedImage, TMovingImage >::BSplineParametersOffsetType

protectedinherited

Definition at line 448 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef BSplineTransformType::ParameterIndexArrayType itk::ImageToImageMetric< TFixedImage, TMovingImage >::BSplineTransformIndexArrayType

protectedinherited

Definition at line 440 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef Array2D<IndexValueType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::BSplineTransformIndicesArrayType

protectedinherited

Definition at line 442 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef BSplineDeformableTransform< CoordinateRepresentationType, ::itk::GetImageDimension<FixedImageType>::ImageDimension, itkGetStaticConstMacro(DeformationSplineOrder) > itk::ImageToImageMetric< TFixedImage, TMovingImage >::BSplineTransformType

protectedinherited

Definition at line 433 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef Array2D<WeightsValueType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::BSplineTransformWeightsArrayType

protectedinherited

Definition at line 437 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef BSplineTransformType::WeightsType itk::ImageToImageMetric< TFixedImage, TMovingImage >::BSplineTransformWeightsType

protectedinherited

Definition at line 435 of file itkOptImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef SmartPointer<const Self> itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::ConstPointer

Definition at line 61 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef Superclass::ParametersValueType itk::ImageToImageMetric< TFixedImage, TMovingImage >::CoordinateRepresentationType

inherited

Type used for representing point components

Definition at line 69 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef Superclass::ParametersValueType itk::ImageToImageMetric< TFixedImage, TMovingImage >::CoordinateRepresentationType

inherited

Type used for representing point components

Definition at line 70 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef CentralDifferenceImageFunction<MovingImageType, CoordinateRepresentationType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::DerivativeFunctionType

protectedinherited

Typedefs for using central difference calculator.

Definition at line 460 of file itkOptImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::DerivativeType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::DerivativeType

Definition at line 81 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::FixedImageConstPointer itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::FixedImageConstPointer

Definition at line 84 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef std::vector<FixedImageIndexType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexContainer

inherited

Definition at line 112 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef FixedImageType::IndexType itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexType

inherited

Index and Point typedef support.

Definition at line 106 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef FixedImageIndexType::IndexValueType itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexValueType

inherited

Definition at line 107 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef FixedImageMaskType::ConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskConstPointer

inherited

Definition at line 135 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef FixedImageMaskType::ConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskConstPointer

inherited

Definition at line 143 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef FixedImageMaskType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskPointer

inherited

Definition at line 134 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef FixedImageMaskType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskPointer

inherited

Definition at line 142 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef SpatialObject< itkGetStaticConstMacro(FixedImageDimension) > itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskType

inherited

Type for the mask of the fixed image. Only pixels that are "inside" this mask will be considered for the computation of the metric

Definition at line 133 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef SpatialObject< itkGetStaticConstMacro(FixedImageDimension) > itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskType

inherited

Type for the mask of the fixed image. Only pixels that are "inside" this mask will be considered for the computation of the metric

Definition at line 141 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef TFixedImage::PixelType itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePixelType

inherited

Definition at line 81 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef TransformType::InputPointType itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePointType

inherited

Definition at line 109 of file itkOptImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::FixedImageRegionType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::FixedImageRegionType

Definition at line 86 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef std::vector<FixedImageSamplePoint> itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageSampleContainer

protectedinherited

FixedImageSamplePoint typedef support.

Definition at line 366 of file itkOptImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::FixedImageType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::FixedImageType

Definition at line 82 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef GradientImageFilterType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterPointer

inherited

Definition at line 124 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef GradientImageFilterType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterPointer

inherited

Definition at line 132 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef GradientRecursiveGaussianImageFilter< MovingImageType, GradientImageType > itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterType

inherited

Definition at line 123 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef GradientRecursiveGaussianImageFilter< MovingImageType, GradientImageType > itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterType

inherited

Definition at line 131 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef SmartPointer<GradientImageType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImagePointer

inherited

Definition at line 120 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef SmartPointer<GradientImageType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImagePointer

inherited

Definition at line 128 of file itkOptImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::GradientImageType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::GradientImageType

Definition at line 75 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::GradientPixelType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::GradientPixelType

Definition at line 76 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef CovariantVector< double, itkGetStaticConstMacro(MovingImageDimension) > itk::ImageToImageMetric< TFixedImage, TMovingImage >::ImageDerivativesType

protectedinherited

Definition at line 463 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef BSplineTransformIndexArrayType::ValueType itk::ImageToImageMetric< TFixedImage, TMovingImage >::IndexValueType

protectedinherited

Definition at line 441 of file itkOptImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::InputPointType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::InputPointType

Definition at line 77 of file itkKappaStatisticImageToImageMetric.h.

typedef int itk::LightObject::InternalReferenceCountType

protectedinherited

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 137 of file itkLightObject.h.

template<class TFixedImage , class TMovingImage >

typedef InterpolatorType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorPointer

inherited

Definition at line 127 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef InterpolatorType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorPointer

inherited

Definition at line 135 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef InterpolateImageFunction< MovingImageType, CoordinateRepresentationType > itk::ImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorType

inherited

Type of the Interpolator Base class

Definition at line 108 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef InterpolateImageFunction< MovingImageType, CoordinateRepresentationType > itk::ImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorType

inherited

Type of the Interpolator Base class

Definition at line 117 of file itkOptImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::MeasureType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::MeasureType

Definition at line 80 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::MovingImageConstPointer itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::MovingImageConstPointer

Definition at line 85 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef MovingImageType::IndexType itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageIndexType

inherited

Definition at line 108 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef MovingImageMaskType::ConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskConstPointer

inherited

Definition at line 143 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef MovingImageMaskType::ConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskConstPointer

inherited

Definition at line 150 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef MovingImageMaskType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskPointer

inherited

Definition at line 142 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef MovingImageMaskType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskPointer

inherited

Definition at line 149 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef SpatialObject< itkGetStaticConstMacro(MovingImageDimension) > itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskType

inherited

Type for the mask of the moving image. Only pixels that are "inside" this mask will be considered for the computation of the metric

Definition at line 141 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef SpatialObject< itkGetStaticConstMacro(MovingImageDimension) > itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskType

inherited

Type for the mask of the moving image. Only pixels that are "inside" this mask will be considered for the computation of the metric

Definition at line 148 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef TMovingImage::PixelType itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePixelType

inherited

Definition at line 76 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef TMovingImage::PixelType itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePixelType

inherited

Definition at line 77 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef std::vector<MovingImagePointType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointArrayType

protectedinherited

Definition at line 444 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef TransformType::OutputPointType itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointType

inherited

Definition at line 110 of file itkOptImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::MovingImageType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::MovingImageType

Definition at line 83 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef MultiThreader itk::ImageToImageMetric< TFixedImage, TMovingImage >::MultiThreaderType

inherited

Definition at line 321 of file itkOptImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::OutputPointType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::OutputPointType

Definition at line 78 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef Superclass::ParametersType itk::ImageToImageMetric< TFixedImage, TMovingImage >::ParametersType

inherited

Type of the parameters.

Definition at line 153 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef Superclass::ParametersType itk::ImageToImageMetric< TFixedImage, TMovingImage >::ParametersType

inherited

Type of the parameters.

Definition at line 160 of file itkOptImageToImageMetric.h.

typedef double itk::CostFunction::ParametersValueType

inherited

ParametersType typedef. It defines a position in the optimization search space.

Definition at line 46 of file itkCostFunction.h.

template<class TFixedImage, class TMovingImage>

typedef SmartPointer<Self> itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::Pointer

Definition at line 60 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::RealType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::RealType

Types transferred from the base class

Definition at line 67 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef KappaStatisticImageToImageMetric itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::Self

Standard class typedefs.

Definition at line 58 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef ImageToImageMetric<TFixedImage, TMovingImage > itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::Superclass

Definition at line 59 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::TransformJacobianType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianType

Definition at line 74 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::TransformParametersType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::TransformParametersType

Definition at line 73 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::TransformPointer itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::TransformPointer

Definition at line 72 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

typedef Superclass::TransformType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::TransformType

Definition at line 71 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

typedef BSplineTransformWeightsType::ValueType itk::ImageToImageMetric< TFixedImage, TMovingImage >::WeightsValueType

protectedinherited

Definition at line 436 of file itkOptImageToImageMetric.h.

Constructor & Destructor Documentation

template<class TFixedImage , class TMovingImage >

itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::KappaStatisticImageToImageMetric ( )

protected

Constructor

Definition at line 32 of file itkKappaStatisticImageToImageMetric.txx.

template<class TFixedImage, class TMovingImage>

virtual itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::~KappaStatisticImageToImageMetric ( )

inlineprotectedvirtual

Definition at line 124 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::KappaStatisticImageToImageMetric ( const Self &  )

private

Member Function Documentation

unsigned long itk::Object::AddObserver ( const EventObject &  event, Command *  cmd  )

inherited

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

Definition at line 389 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), itk::ProgressAccumulator::RegisterInternalFilter(), otb::ImageFileWriter< TInputImage >::Update(), and otb::WriterWatcherBase::WriterWatcherBase().

unsigned long itk::Object::AddObserver ( const EventObject &  event, Command *  cmd  ) const

inherited

Definition at line 401 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

void itk::LightObject::BreakOnError ( )

staticinherited

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

Definition at line 149 of file itkLightObject.cxx.

template<class TFixedImage, class TMovingImage>

virtual void itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::ComplementOff ( )

virtual

template<class TFixedImage, class TMovingImage>

virtual void itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::ComplementOn ( )

virtual

template<class TFixedImage , class TMovingImage >

void itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::ComputeGradient ( void  )

virtual

Computes the gradient image and assigns it to m_GradientImage

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

Definition at line 314 of file itkKappaStatisticImageToImageMetric.txx.

References itk::ImageConstIteratorWithIndex< TImage >::GoToBegin().

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ComputeGradientOff ( )

virtualinherited

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ComputeGradientOff ( )

virtualinherited

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ComputeGradientOn ( )

virtualinherited

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ComputeGradientOn ( )

virtualinherited

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ComputeImageDerivatives ( const MovingImagePointType &  mappedPoint, ImageDerivativesType &  gradient, unsigned int  threadID  ) const

protectedvirtualinherited

Compute image derivatives at a point.

Compute image derivatives using a central difference function if we are not using a BSplineInterpolator, which includes derivatives.

Definition at line 1158 of file itkOptImageToImageMetric.txx.

template<class TFixedImage, class TMovingImage>

virtual::itk::LightObject::Pointer itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::CreateAnother ( void  ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

void itk::Object::DebugOff ( ) const

virtualinherited

Turn debugging output off.

Definition at line 253 of file itkObject.cxx.

void itk::Object::DebugOn ( ) const

virtualinherited

Turn debugging output on.

Definition at line 242 of file itkObject.cxx.

void itk::LightObject::Delete ( )

virtualinherited

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Delete a itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C++ delete method will not work with reference counting.

Definition at line 88 of file itkLightObject.cxx.

Command * itk::Object::GetCommand ( unsigned long  tag )

inherited

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

Definition at line 414 of file itkObject.cxx.

References itk::Object::GetCommand(), and NULL.

Referenced by itk::Object::GetCommand().

template<class TFixedImage, class TMovingImage>

virtual bool itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::GetComplement ( ) const

virtual

template<class TFixedImage , class TMovingImage >

virtual const bool& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetComputeGradient ( )

virtualinherited

template<class TFixedImage , class TMovingImage >

virtual const bool& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetComputeGradient ( )

virtualinherited

bool itk::Object::GetDebug ( ) const

inherited

Get the value of the debug flag.

Definition at line 264 of file itkObject.cxx.

Referenced by otb::ogr::ImageReference< double >::GetDebug().

template<class TFixedImage , class TMovingImage >

void itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::GetDerivative ( const TransformParametersType &  parameters, DerivativeType &  derivative  ) const

virtual

Get the derivatives of the match measure.

Get the Derivative Measure

Implements itk::SingleValuedCostFunction.

Definition at line 173 of file itkKappaStatisticImageToImageMetric.txx.

References itk::Array< TValueType >::Fill().

template<class TFixedImage , class TMovingImage >

virtual const FixedImageType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImage ( )

virtualinherited

Get the Fixed Image.

template<class TFixedImage , class TMovingImage >

virtual const FixedImageType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImage ( )

virtualinherited

Get the Fixed Image.

template<class TFixedImage , class TMovingImage >

virtual const FixedImageMaskType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImageMask ( )

virtualinherited

template<class TFixedImage , class TMovingImage >

virtual const FixedImageMaskType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImageMask ( )

virtualinherited

template<class TFixedImage , class TMovingImage >

virtual const FixedImageRegionType& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImageRegion ( )

virtualinherited

Get the region over which the metric will be computed

template<class TFixedImage , class TMovingImage >

virtual const FixedImageRegionType& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImageRegion ( )

virtualinherited

Get the region over which the metric will be computed

template<class TFixedImage , class TMovingImage >

virtual const FixedImagePixelType& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImageSamplesIntensityThreshold ( )

virtualinherited

template<class TFixedImage, class TMovingImage>

virtual RealType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::GetForegroundValue ( ) const

virtual

bool itk::Object::GetGlobalWarningDisplay ( )

staticinherited

Get the value of the global debug output control flag.

Definition at line 381 of file itkObject.cxx.

template<class TFixedImage , class TMovingImage >

virtual const GradientImageType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetGradientImage ( )

virtualinherited

Get Gradient Image.

template<class TFixedImage , class TMovingImage >

virtual const GradientImageType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetGradientImage ( )

virtualinherited

Get Gradient Image.

template<class TFixedImage , class TMovingImage >

virtual const InterpolatorType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetInterpolator ( )

virtualinherited

Get a pointer to the Interpolator.

template<class TFixedImage , class TMovingImage >

virtual const InterpolatorType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetInterpolator ( )

virtualinherited

Get a pointer to the Interpolator.

MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  )

inherited

Returns

A reference to this objects MetaDataDictionary.

Warning

This reference may be changed.

Definition at line 532 of file itkObject.cxx.

References NULL.

Referenced by otb::RenderingImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData(), itk::Brains2MaskImageIO::CanReadFile(), otb::DataNode< TPrecision, VDimension, TValuePrecision >::CopyFieldList(), otb::VectorImage< TPixel, VImageDimension >::CopyInformation(), otb::Image< TPixel, VImageDimension >::CopyInformation(), itk::GDCMImageIO::GetBodyPart(), itk::GDCMImageIO::GetInstitution(), itk::GDCMImageIO::GetManufacturer(), itk::GDCMImageIO::GetModality(), itk::GDCMImageIO::GetModel(), itk::GDCMImageIO::GetNumberOfSeriesInStudy(), itk::GDCMImageIO::GetNumberOfStudyRelatedSeries(), itk::GDCMImageIO::GetPatientAge(), itk::GDCMImageIO::GetPatientDOB(), itk::GDCMImageIO::GetPatientID(), itk::GDCMImageIO::GetPatientName(), itk::GDCMImageIO::GetPatientSex(), itk::GDCMImageIO::GetScanOptions(), itk::GDCMImageIO::GetStudyDate(), itk::GDCMImageIO::GetStudyDescription(), itk::GDCMImageIO::GetStudyID(), itk::GDCMImageIO::GetValueFromTag(), otb::GDALImageIO::InternalReadImageInformation(), itk::GDCMImageIO::InternalReadImageInformation(), otb::GDALImageIO::InternalWriteImageInformation(), otb::RAMDrivenAdaptativeStreamingManager< TImage >::PrepareStreaming(), itk::DICOMImageIO2::Read(), itk::DICOMImageIO2::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), otb::JPEG2000ImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), itk::MRCImageIO::ReadImageInformation(), itk::IPLCommonImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), otb::ImageMetadataInterfaceBase::SetImage(), itk::NiftiImageIO::SetImageIOMetadataFromNIfTI(), otb::VectorDataToLabelImageFilter< TVectorData, TOutputImage >::SetOutputParametersFromImage(), itk::NrrdImageIO::Write(), itk::GDCMImageIO::Write(), and itk::PolygonGroupSpatialObjectXMLFileWriter::WriteFile().

const MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  ) const

inherited

Returns

A constant reference to this objects MetaDataDictionary.

Definition at line 543 of file itkObject.cxx.

References NULL.

template<class TFixedImage , class TMovingImage >

virtual const MovingImageType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetMovingImage ( )

virtualinherited

Get the Moving Image.

template<class TFixedImage , class TMovingImage >

virtual const MovingImageType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetMovingImage ( )

virtualinherited

Get the Moving Image.

template<class TFixedImage , class TMovingImage >

virtual const MovingImageMaskType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetMovingImageMask ( )

virtualinherited

template<class TFixedImage , class TMovingImage >

virtual const MovingImageMaskType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetMovingImageMask ( )

virtualinherited

unsigned long itk::Object::GetMTime ( void  ) const

virtualinherited

Return this objects modified time.

Return the modification for this object.

Reimplemented in itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::SpatialObject< TDimension >, itk::SpatialObject< 3 >, itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, otb::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::MeshSpatialObject< TMesh >, and itk::SceneSpatialObject< TSpaceDimension >.

Definition at line 286 of file itkObject.cxx.

Referenced by itk::DeformationFieldSource< TOutputImage >::GetMTime(), itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >::GetMTime(), otb::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< TDimension >::GetMTime(), itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime(), otb::Function::NoStretchRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), itk::VTKImageExportBase::PipelineModifiedCallback(), and itk::ProcessObject::UpdateOutputInformation().

template<class TFixedImage, class TMovingImage>

virtual const char* itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

template<class TFixedImage , class TMovingImage >

virtual const unsigned long& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfFixedImageSamples ( )

virtualinherited

template<class TFixedImage , class TMovingImage >

unsigned long itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfMovingImageSamples ( void  )

inlineinherited

Get the number of pixels considered in the computation.

Definition at line 187 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

unsigned int itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfParameters ( void  ) const

inlinevirtualinherited

Return the number of parameters required by the Transform

Implements itk::CostFunction.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

Definition at line 223 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

unsigned int itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfParameters ( void  ) const

inlinevirtualinherited

Return the number of parameters required by the Transform

Implements itk::CostFunction.

Definition at line 234 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

virtual const unsigned long& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfPixelsCounted ( )

virtualinherited

Get the number of pixels considered in the computation.

template<class TFixedImage , class TMovingImage >

virtual const unsigned long& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfPixelsCounted ( )

virtualinherited

template<class TFixedImage , class TMovingImage >

unsigned long itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfSpatialSamples ( void  )

inlineinherited

Definition at line 257 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

virtual const unsigned int& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfThreads ( )

virtualinherited

Reimplemented in itk::MatchCardinalityImageToImageMetric< TFixedImage, TMovingImage >.

virtual int itk::LightObject::GetReferenceCount ( ) const

inlinevirtualinherited

Gets the reference count on this object.

Definition at line 105 of file itkLightObject.h.

template<class TFixedImage , class TMovingImage >

virtual const MultiThreaderType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetThreader ( )

virtualinherited

Get the Threader.

template<class TFixedImage , class TMovingImage >

const TransformPointer* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetThreaderTransform ( )

inlineinherited

Definition at line 326 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

virtual const TransformType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetTransform ( )

virtualinherited

Get a pointer to the Transform.

template<class TFixedImage , class TMovingImage >

virtual const TransformType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetTransform ( )

virtualinherited

Get a pointer to the Transform.

template<class TFixedImage , class TMovingImage >

virtual const bool& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetUseAllPixels ( )

virtualinherited

Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.

template<class TFixedImage , class TMovingImage >

virtual const bool& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetUseCachingOfBSplineWeights ( )

virtualinherited

Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.

template<class TFixedImage , class TMovingImage >

virtual const bool& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetUseFixedImageIndexes ( )

virtualinherited

template<class TFixedImage , class TMovingImage >

virtual const bool& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetUseFixedImageSamplesIntensityThreshold ( )

virtualinherited

template<class TFixedImage , class TMovingImage >

virtual const bool& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetUseSequentialSampling ( )

virtualinherited

template<class TFixedImage , class TMovingImage >

KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::MeasureType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::GetValue ( const TransformParametersType &  parameters ) const

virtual

Get the value of the metric at a particular parameter setting. The metric value is given by 2*|A&B|/(|A|+|B|), where A is the moving image, B is the fixed image, & is intersection, and |.| indicates the area of the enclosed set. If ComplementOn has been set, the metric value is 1.0-2*|A&B|/(|A|+|B|).

Get the match Measure

Implements itk::SingleValuedCostFunction.

Definition at line 48 of file itkKappaStatisticImageToImageMetric.txx.

virtual void itk::SingleValuedCostFunction::GetValueAndDerivative ( const ParametersType &  parameters, MeasureType &  value, DerivativeType &  derivative  ) const

inlinevirtualinherited

This method returns the value and derivative of the cost function corresponding to the specified parameters

Reimplemented in itk::ImageToSpatialObjectMetric< TFixedImage, TMovingSpatialObject >.

Definition at line 71 of file itkSingleValuedCostFunction.h.

template<class TFixedImage , class TMovingImage >

void itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivative	(	const TransformParametersType &	parameters,
		MeasureType &	Value,
		DerivativeType &	Derivative
	)		const

Get both the value and derivative. This method internally calls the GetValue() and the GetDerivative() method.

Get both the match Measure and theDerivative Measure

Definition at line 385 of file itkKappaStatisticImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

ITK_THREAD_RETURN_TYPE itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeMultiThreaded ( void *  arg )

staticprotectedinherited

Get the match Measure

Definition at line 1420 of file itkOptImageToImageMetric.txx.

References itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeThread(), ITK_THREAD_RETURN_VALUE, and itk::ImageToImageMetric< TFixedImage, TMovingImage >::MultiThreaderParameterType::metric.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeMultiThreadedInitiate ( void  ) const

protectedinherited

Definition at line 1369 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

ITK_THREAD_RETURN_TYPE itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeMultiThreadedPostProcess ( void *  arg )

staticprotectedinherited

Get the match Measure

Definition at line 1441 of file itkOptImageToImageMetric.txx.

References itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeThreadPostProcess(), ITK_THREAD_RETURN_VALUE, and itk::ImageToImageMetric< TFixedImage, TMovingImage >::MultiThreaderParameterType::metric.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeMultiThreadedPostProcessInitiate ( void  ) const

protectedinherited

Definition at line 1386 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

ITK_THREAD_RETURN_TYPE itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeMultiThreadedPreProcess ( void *  arg )

staticprotectedinherited

Get the match Measure

Definition at line 1399 of file itkOptImageToImageMetric.txx.

References itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeThreadPreProcess(), ITK_THREAD_RETURN_VALUE, and itk::ImageToImageMetric< TFixedImage, TMovingImage >::MultiThreaderParameterType::metric.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeMultiThreadedPreProcessInitiate ( void  ) const

protectedinherited

Definition at line 1357 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeThread ( unsigned int  threadID ) const

inlineprotectedvirtualinherited

Definition at line 1459 of file itkOptImageToImageMetric.txx.

Referenced by itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeMultiThreaded().

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeThreadPostProcess ( unsigned int  , bool    ) const

inlineprotectedvirtualinherited

Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.

Definition at line 571 of file itkOptImageToImageMetric.h.

Referenced by itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeMultiThreadedPostProcess().

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeThreadPreProcess ( unsigned int  , bool    ) const

inlineprotectedvirtualinherited

Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.

Definition at line 560 of file itkOptImageToImageMetric.h.

Referenced by itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeMultiThreadedPreProcess().

template<class TFixedImage , class TMovingImage >

virtual bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeThreadProcessSample ( unsigned int  , unsigned long  , const MovingImagePointType &  , double  , const ImageDerivativesType &    ) const

inlineprotectedvirtualinherited

Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.

Definition at line 564 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

ITK_THREAD_RETURN_TYPE itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueMultiThreaded ( void *  arg )

staticprotectedinherited

Get the match Measure

Definition at line 1257 of file itkOptImageToImageMetric.txx.

References itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueThread(), ITK_THREAD_RETURN_VALUE, and itk::ImageToImageMetric< TFixedImage, TMovingImage >::MultiThreaderParameterType::metric.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueMultiThreadedInitiate ( void  ) const

protectedinherited

Definition at line 1204 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

ITK_THREAD_RETURN_TYPE itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueMultiThreadedPostProcess ( void *  arg )

staticprotectedinherited

Get the match Measure

Definition at line 1277 of file itkOptImageToImageMetric.txx.

References itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueThreadPostProcess(), ITK_THREAD_RETURN_VALUE, and itk::ImageToImageMetric< TFixedImage, TMovingImage >::MultiThreaderParameterType::metric.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueMultiThreadedPostProcessInitiate ( void  ) const

protectedinherited

Definition at line 1222 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

ITK_THREAD_RETURN_TYPE itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueMultiThreadedPreProcess ( void *  arg )

staticprotectedinherited

Get the match Measure

Definition at line 1235 of file itkOptImageToImageMetric.txx.

References itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueThreadPreProcess(), ITK_THREAD_RETURN_VALUE, and itk::ImageToImageMetric< TFixedImage, TMovingImage >::MultiThreaderParameterType::metric.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueMultiThreadedPreProcessInitiate ( void  ) const

protectedinherited

Definition at line 1192 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueThread ( unsigned int  threadID ) const

inlineprotectedvirtualinherited

Definition at line 1296 of file itkOptImageToImageMetric.txx.

Referenced by itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueMultiThreaded().

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueThreadPostProcess ( unsigned int  , bool    ) const

inlineprotectedvirtualinherited

Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.

Definition at line 547 of file itkOptImageToImageMetric.h.

Referenced by itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueMultiThreadedPostProcess().

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueThreadPreProcess ( unsigned int  , bool    ) const

inlineprotectedvirtualinherited

Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.

Definition at line 537 of file itkOptImageToImageMetric.h.

Referenced by itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueMultiThreadedPreProcess().

template<class TFixedImage , class TMovingImage >

virtual bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueThreadProcessSample ( unsigned int  , unsigned long  , const MovingImagePointType &  , double    ) const

inlineprotectedvirtualinherited

Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.

Definition at line 541 of file itkOptImageToImageMetric.h.

static void itk::Object::GlobalWarningDisplayOff ( )

inlinestaticinherited

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

Referenced by itk::OutputWindow::DisplayText(), itk::Win32OutputWindow::PromptText(), and itk::Win32OutputWindow::WndProc().

static void itk::Object::GlobalWarningDisplayOn ( )

inlinestaticinherited

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

bool itk::Object::HasObserver ( const EventObject &  event ) const

inherited

Return true if an observer is registered for this event.

Definition at line 467 of file itkObject.cxx.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::Initialize ( void  ) throw ( ExceptionObject )

virtualinherited

Initialize the Metric by making sure that all the components are present and plugged together correctly

Initialize

Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, itk::GradientDifferenceImageToImageMetric< TFixedImage, TMovingImage >, itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.

Definition at line 86 of file itkImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::Initialize ( void  ) throw ( ExceptionObject )

virtualinherited

Initialize the Metric by making sure that all the components are present and plugged together correctly

Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, itk::GradientDifferenceImageToImageMetric< TFixedImage, TMovingImage >, itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.

void itk::Object::InvokeEvent ( const EventObject &  event )

inherited

Call Execute on all the Commands observing this event id.

Definition at line 446 of file itkObject.cxx.

Referenced by otb::Wrapper::Application::AddProcess(), itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::IterateThreaderCallback(), and itk::VTKImageExportBase::UpdateDataCallback().

void itk::Object::InvokeEvent ( const EventObject &  event ) const

inherited

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

Definition at line 457 of file itkObject.cxx.

void itk::Object::Modified ( void  ) const

virtualinherited

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Make sure this object's modified time is greater than all others.

Reimplemented in otb::SVMModel< TValue, TLabel >, otb::SurfaceAdjacencyEffect6SCorrectionSchemeFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, otb::GenericRSTransform< TScalarType, NInputDimensions, NOutputDimensions >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, TBufferConverter >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, MeanShift::VectorBufferConverter >, otb::GCPsToRPCSensorModelImageFilter< TImage >, otb::Polygon< TValue >, otb::ImageRegionAdaptativeSplitter< VImageDimension >, otb::GenericInterpolateImageFunction< TInputImage, TFunction, TBoundaryCondition, TCoordRep >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, VDimension >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, 2 >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, otb::PhysicalToRPCSensorModelImageFilter< TImage >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, TFilter >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, RankImageFilter< TInputImage, TInputImage, FlatStructuringElement< ::itk::GetImageDimension< TInputImage >::ImageDimension > > >, itk::NormalizeImageFilter< TInputImage, TOutputImage >, and otb::StatisticsXMLFileReader< TMeasurementVector >.

Definition at line 297 of file itkObject.cxx.

Referenced by otb::Wrapper::InputImageListParameter::AddFromFileName(), otb::Wrapper::InputVectorDataListParameter::AddFromFileName(), otb::Wrapper::InputFilenameListParameter::AddFromFileName(), otb::Wrapper::InputImageListParameter::AddImage(), otb::Wrapper::InputVectorDataListParameter::AddNullElement(), otb::Wrapper::InputImageListParameter::AddNullElement(), otb::Wrapper::InputFilenameListParameter::AddNullElement(), otb::Wrapper::StringListParameter::AddNullElement(), otb::VectorDataModel::AddPointToGeometry(), otb::Wrapper::InputVectorDataListParameter::AddVectorData(), otb::Wrapper::InputFilenameListParameter::ClearValue(), otb::Wrapper::InputVectorDataListParameter::ClearValue(), otb::Wrapper::InputImageListParameter::ClearValue(), otb::VectorDataModel::DeleteGeometry(), otb::VectorDataModel::EndGeometry(), otb::Wrapper::InputFilenameListParameter::Erase(), otb::Wrapper::InputVectorDataListParameter::Erase(), otb::Wrapper::InputImageListParameter::Erase(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), otb::ImageWidget< TInputImage >::LinearInterpolationOff(), otb::ImageWidget< TInputImage >::LinearInterpolationOn(), itk::MatrixOffsetTransformBase< TScalarType, NInputDimensions, NOutputDimensions >::MatrixOffsetTransformBase(), otb::ogr::ImageReference< double >::Modified(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetAutoMinMax(), otb::BlendingImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetBlendingFunction(), otb::ImageLayerGenerator< TImageLayer >::SetBlendingFunction(), otb::TileMapImageIO::SetCacheDirectory(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetChannelList(), itk::LBFGSBOptimizer::SetCostFunction(), itk::MINC2ImageIO::SetDimensionName(), itk::ImageIOBase::SetDimensions(), otb::ImageIOBase::SetDimensions(), itk::ImageIOBase::SetDirection(), otb::ImageIOBase::SetDirection(), otb::Wrapper::InputImageListParameter::SetImageList(), itk::GDCMSeriesFileNames::SetInputDirectory(), otb::HistogramStatisticsFunction< TInputHistogram, TOutput >::SetInputHistogram(), otb::ImageToGenericRSOutputParameters< TImage >::SetInputKeywordList(), otb::Wrapper::InputImageListParameter::SetListFromFileName(), otb::Wrapper::InputVectorDataListParameter::SetListFromFileName(), otb::Wrapper::InputFilenameListParameter::SetListFromFileName(), otb::Function::RenderingFunction< TPixel, TRGBPixel >::SetListSample(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), otb::Wrapper::InputVectorDataListParameter::SetNthFileName(), otb::Wrapper::InputImageListParameter::SetNthFileName(), otb::Wrapper::InputFilenameListParameter::SetNthFileName(), otb::ImageIOBase::SetNumberOfDimensions(), itk::ImageIOBase::SetNumberOfDimensions(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ImageIOBase::SetOrigin(), otb::ImageIOBase::SetOrigin(), otb::ImageToGenericRSOutputParameters< TImage >::SetOutputProjectionRef(), otb::MapProjectionAdapter::SetParameter(), otb::Function::GaussianRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetParameters(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetParameters(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), otb::ImageLayerGenerator< TImageLayer >::SetRenderingFunction(), otb::RenderingImageFilter< TInputImage, TOutputImage >::SetRenderingFunction(), itk::ImageIOBase::SetSpacing(), otb::ImageIOBase::SetSpacing(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation(), otb::Wrapper::InputFilenameParameter::SetValue(), otb::Wrapper::OutputFilenameParameter::SetValue(), otb::Wrapper::ListViewParameter::SetValue(), otb::Wrapper::ChoiceParameter::SetValue(), otb::Wrapper::InputVectorDataListParameter::SetVectorDataList(), and otb::MapProjectionAdapter::SetWkt().

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::MultiThreadingInitialize ( void  ) throw ( ExceptionObject )

virtualinherited

Initialize the components related to supporting multiple threads

MultiThreading Initialize

Set the fixed parameters first. Some transforms have parameters which depend on the values of the fixed parameters. For instance, the BSplineDeformableTransform checks the grid size (part of the fixed parameters) before setting the parameters.

Definition at line 364 of file itkOptImageToImageMetric.txx.

References itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >::GetNumberOfWeights(), itk::SmartPointer< TObjectType >::GetPointer(), NULL, itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::SetFixedParameters(), itk::BSplineInterpolateImageFunction< TImageType, TCoordRep, TCoefficientType >::SetNumberOfThreads(), itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::SetParameters(), and itk::Array< TValueType >::SetSize().

template<class TFixedImage, class TMovingImage>

static Pointer itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::New ( )

static

Method for creation through the object factory.

template<class TFixedImage, class TMovingImage>

void itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::operator= ( const Self &  )

private

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::PreComputeTransformValues ( void  )

protectedvirtualinherited

Cache pre-transformed points, weights and indices.

Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.

Definition at line 856 of file itkOptImageToImageMetric.txx.

References itk::Array< TValueType >::Fill().

void itk::LightObject::Print ( std::ostream &  os, Indent  indent = 0  ) const

inherited

Cause the object to print itself out.

Avoid DLL boundary problems. This function will be common to all itk objects. It just calls the header/self/trailer virtual print methods, which can be overriden by subclasses (any itk object).

Definition at line 135 of file itkLightObject.cxx.

References itk::Indent::GetNextIndent().

Referenced by itk::operator<<().

void itk::LightObject::PrintHeader ( std::ostream &  os, Indent  indent  ) const

protectedvirtualinherited

Define a default print header for all objects.

Definition at line 320 of file itkLightObject.cxx.

bool itk::Object::PrintObservers ( std::ostream &  os, Indent  indent  ) const

protectedinherited

Definition at line 478 of file itkObject.cxx.

template<class TFixedImage , class TMovingImage >

void itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protectedvirtual

PrintSelf

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

Definition at line 399 of file itkKappaStatisticImageToImageMetric.txx.

void itk::LightObject::PrintTrailer ( std::ostream &  os, Indent  indent  ) const

protectedvirtualinherited

Define a default print trailer for all objects.

Definition at line 331 of file itkLightObject.cxx.

void itk::Object::Register ( ) const

virtualinherited

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

Definition at line 309 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::RegisterFactory().

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ReinitializeSeed ( )

inherited

Reinitialize the seed of the random number generator that selects the sample of pixels used for estimating the image histograms and the joint histogram. By nature, this metric is not deterministic, since at each run it may select a different set of pixels. By initializing the random number generator seed to the same value you can restore determinism. On the other hand, calling the method ReinitializeSeed() without arguments will use the clock from your machine in order to have a very random initialization of the seed. This will indeed increase the non-deterministic behavior of the metric.

Definition at line 835 of file itkOptImageToImageMetric.txx.

References itk::Statistics::MersenneTwisterRandomVariateGenerator::GetInstance().

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ReinitializeSeed ( int  seed )

inherited

Definition at line 843 of file itkOptImageToImageMetric.txx.

References itk::Statistics::MersenneTwisterRandomVariateGenerator::GetInstance().

void itk::Object::RemoveAllObservers ( )

inherited

Remove all observers .

Definition at line 435 of file itkObject.cxx.

void itk::Object::RemoveObserver ( unsigned long  tag )

inherited

Remove the observer with this tag value.

Definition at line 425 of file itkObject.cxx.

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), and otb::ImageFileWriter< TInputImage >::Update().

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SampleFixedImageIndexes ( FixedImageSampleContainer &  samples ) const

protectedvirtualinherited

Use the indexes that have been passed to the metric

Definition at line 553 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SampleFixedImageRegion ( FixedImageSampleContainer &  samples ) const

protectedvirtualinherited

Uniformly select a sample set from the fixed image domain.

Sample the fixed image using a random walk

Definition at line 587 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SampleFullFixedImageRegion ( FixedImageSampleContainer &  samples ) const

protectedvirtualinherited

Gather all the pixels from the fixed image domain.

Sample the fixed image domain using all pixels in the Fixed image region

Definition at line 703 of file itkOptImageToImageMetric.txx.

template<class TFixedImage, class TMovingImage>

virtual void itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::SetComplement ( bool  _arg )

virtual

Set/Get whether this metric returns 2*|A&B|/(|A|+|B|) (ComplementOff, the default) or 1.0 - 2*|A&B|/(|A|+|B|) (ComplementOn). When using an optimizer that minimizes metric values use ComplementOn().

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetComputeGradient ( bool  _arg )

virtualinherited

Set/Get gradient computation.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetComputeGradient ( bool  _arg )

virtualinherited

Set/Get gradient computation.

void itk::Object::SetDebug ( bool  debugFlag ) const

inherited

Set the value of the debug flag. A non-zero value turns debugging on.

Definition at line 275 of file itkObject.cxx.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImage ( const FixedImageType *  _arg )

virtualinherited

Connect the Fixed Image.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImage ( const FixedImageType *  _arg )

virtualinherited

Connect the Fixed Image.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageIndexes ( const FixedImageIndexContainer &  indexes )

inherited

Set the fixed image indexes to be used as the samples when computing the match metric

Definition at line 171 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageMask ( FixedImageMaskType *  _arg )

virtualinherited

Set/Get the fixed image mask.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageMask ( const FixedImageMaskType *  mask )

inlinevirtualinherited

Definition at line 203 of file itkImageToImageMetric.h.

References itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageMask().

Referenced by itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageMask().

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageMask ( FixedImageMaskType *  _arg )

virtualinherited

Set/Get the fixed image mask.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageMask ( const FixedImageMaskType *  _arg )

virtualinherited

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageRegion ( FixedImageRegionType  _arg )

virtualinherited

Set the region over which the metric will be computed

Definition at line 236 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageRegion ( const FixedImageRegionType  reg )

inherited

Set the region over which the metric will be computed

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageSamplesIntensityThreshold ( const FixedImagePixelType &  thresh )

inherited

Minimum fixed-image intensity needed for a sample to be used in the metric computation

Definition at line 204 of file itkOptImageToImageMetric.txx.

template<class TFixedImage, class TMovingImage>

virtual void itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::SetForegroundValue ( RealType  _arg )

virtual

This method allows the user to set the foreground value. The default value is 255.

void itk::Object::SetGlobalWarningDisplay ( bool  val )

staticinherited

This is a global flag that controls whether any debug, warning or error messages are displayed.

Set the value of the global debug output control flag.

Definition at line 370 of file itkObject.cxx.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetInterpolator ( InterpolatorType *  _arg )

virtualinherited

Connect the Interpolator.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetInterpolator ( InterpolatorType *  _arg )

virtualinherited

Connect the Interpolator.

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary &  rhs )

inherited

Returns

Set the MetaDataDictionary

Definition at line 554 of file itkObject.cxx.

References NULL.

Referenced by otb::VectorImage< TPixel, VImageDimension >::CopyInformation(), and otb::Image< TPixel, VImageDimension >::CopyInformation().

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetMovingImage ( const MovingImageType *  _arg )

virtualinherited

Connect the Moving Image.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetMovingImage ( const MovingImageType *  _arg )

virtualinherited

Connect the Moving Image.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetMovingImageMask ( MovingImageMaskType *  _arg )

virtualinherited

Set/Get the moving image mask.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetMovingImageMask ( const MovingImageMaskType *  mask )

inlinevirtualinherited

Definition at line 193 of file itkImageToImageMetric.h.

References itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetMovingImageMask().

Referenced by itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetMovingImageMask().

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetMovingImageMask ( MovingImageMaskType *  _arg )

virtualinherited

Set/Get the moving image mask.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetMovingImageMask ( const MovingImageMaskType *  _arg )

virtualinherited

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetNumberOfFixedImageSamples ( unsigned long  numSamples )

virtualinherited

Number of spatial samples to used to compute metric This sets the number of samples.

Definition at line 155 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetNumberOfSpatialSamples ( unsigned long  num )

inlineinherited

Number of spatial samples to used to compute metric This sets the number of samples.

Definition at line 253 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetNumberOfThreads ( unsigned int  numberOfThreads )

inherited

Set/Get number of threads to use for computations.

Set the number of threads. This will be clamped by the multithreader, so we must check to see if it is accepted.

Definition at line 129 of file itkOptImageToImageMetric.txx.

void itk::Object::SetReferenceCount ( int  ref )

virtualinherited

Sets the reference count (use with care)

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 347 of file itkObject.cxx.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetTransform ( TransformType *  _arg )

virtualinherited

Connect the Transform.

Reimplemented in itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetTransform ( TransformType *  _arg )

virtualinherited

Connect the Transform.

Reimplemented in itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetTransformParameters ( const ParametersType &  parameters ) const

inherited

Set the parameters defining the Transform.

Set the parameters that define a unique transform

Definition at line 70 of file itkImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetTransformParameters ( const ParametersType &  parameters ) const

inherited

Set the parameters defining the Transform.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetUseAllPixels ( bool  useAllPixels )

inherited

Select whether the metric will be computed using all the pixels on the fixed image region, or only using a set of randomly selected pixels. This value override IntensityThreshold, Masks, and SequentialSampling.

Definition at line 251 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetUseCachingOfBSplineWeights ( bool  _arg )

virtualinherited

This boolean flag is only relevant when this metric is used along with a BSplineDeformableTransform. The flag enables/disables the caching of values computed when a physical point is mapped through the BSplineDeformableTransform. In particular it will cache the values of the BSpline weights for that points, and the indexes indicating what BSpline-grid nodes are relevant for that specific point. This caching is made optional due to the fact that the memory arrays used for the caching can reach large sizes even for moderate image size problems. For example, for a 3D image of 256^3, using 20% of pixels, these arrays will take about 1 Gigabyte of RAM for storage. The ratio of computing time between using the cache or not using the cache can reach 1:5, meaning that using the caching can provide a five times speed up. It is therefore, interesting to enable the caching, if enough memory is available for it. The caching is enabled by default, in order to preserve backward compatibility with previous versions of ITK.

Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetUseFixedImageIndexes ( bool  useIndex )

inherited

Definition at line 185 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetUseFixedImageSamplesIntensityThreshold ( bool  useThresh )

inherited

Definition at line 217 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetUseSequentialSampling ( bool  sequentialSampling )

inherited

If set to true, then every pixel in the fixed image will be scanned to determine if it should be used in registration metric computation. A pixel will be chosen if it meets any mask or threshold limits set. If set to false, then UseAllPixels will be set to false.

Definition at line 274 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SynchronizeTransforms ( ) const

protectedvirtualinherited

Synchronizes the threader transforms with the transform member variable.

This method can be const because we are not altering the m_ThreaderTransform pointer. We are altering the object that m_ThreaderTransform[idx] points at. This is allowed under C++ const rules.

Set the fixed parameters first. Some transforms have parameters which depend on the values of the fixed parameters. For instance, the BSplineDeformableTransform checks the grid size (part of the fixed parameters) before setting the parameters.

Definition at line 1606 of file itkOptImageToImageMetric.txx.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::TransformPoint ( unsigned int  sampleNumber, MovingImagePointType &  mappedPoint, bool &  sampleOk, double &  movingImageValue, unsigned int  threadID  ) const

protectedvirtualinherited

Transform a point from FixedImage domain to MovingImage domain. This function also checks if mapped point is within support region.

Definition at line 917 of file itkOptImageToImageMetric.txx.

References itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::TransformPoint().

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::TransformPointWithDerivatives ( unsigned int  sampleNumber, MovingImagePointType &  mappedPoint, bool &  sampleOk, double &  movingImageValue, ImageDerivativesType &  movingImageGradient, unsigned int  threadID  ) const

protectedvirtualinherited

Transform a point from FixedImage domain to MovingImage domain. This function also checks if mapped point is within support region.

Definition at line 1035 of file itkOptImageToImageMetric.txx.

References itk::Transform< TScalarType, NInputDimensions, NOutputDimensions >::TransformPoint().

void itk::Object::UnRegister ( ) const

virtualinherited

Decrease the reference count (release by another object).

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 324 of file itkObject.cxx.

Referenced by itk::Object::New(), and itk::ObjectFactoryBase::UnRegisterFactory().

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::UseAllPixelsOff ( void  )

inlineinherited

Definition at line 278 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

void itk::ImageToImageMetric< TFixedImage, TMovingImage >::UseAllPixelsOn ( void  )

inlineinherited

Definition at line 274 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::UseCachingOfBSplineWeightsOff ( )

virtualinherited

Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.

template<class TFixedImage , class TMovingImage >

virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::UseCachingOfBSplineWeightsOn ( )

virtualinherited

Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.

Member Data Documentation

template<class TFixedImage , class TMovingImage >

const unsigned int itk::ImageToImageMetric< TFixedImage, TMovingImage >::DeformationSplineOrder = 3

staticprotectedinherited

Definition at line 429 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

static const unsigned int itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageDimension = TFixedImage::ImageDimension

staticinherited

Definition at line 91 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

BSplineInterpolatorType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplineInterpolator

protectedinherited

Pointer to BSplineInterpolator.

Definition at line 503 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

BSplineParametersOffsetType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplineParametersOffset

protectedinherited

Definition at line 473 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

MovingImagePointArrayType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplinePreTransformPointsArray

protectedinherited

Definition at line 470 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

BSplineTransformType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplineTransform

protectedinherited

Definition at line 466 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

BSplineTransformIndexArrayType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplineTransformIndices

mutableprotectedinherited

Definition at line 478 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

BSplineTransformIndicesArrayType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplineTransformIndicesArray

protectedinherited

Definition at line 469 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

BSplineTransformWeightsType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplineTransformWeights

mutableprotectedinherited

Definition at line 477 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

BSplineTransformWeightsArrayType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplineTransformWeightsArray

protectedinherited

Definition at line 468 of file itkOptImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

bool itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::m_Complement

private

Definition at line 133 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ComputeGradient

protectedinherited

Definition at line 243 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

DerivativeFunctionType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_DerivativeCalculator

protectedinherited

Pointer to central difference calculator.

Definition at line 506 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

FixedImageConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImage

protectedinherited

Definition at line 237 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

FixedImageIndexContainer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageIndexes

protectedinherited

Definition at line 360 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

FixedImageMaskPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageMask

mutableprotectedinherited

Definition at line 250 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

FixedImageMaskConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageMask

protectedinherited

Definition at line 404 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

FixedImageSampleContainer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageSamples

protectedinherited

Container to store a set of points and fixed image values.

Definition at line 379 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

FixedImagePixelType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageSamplesIntensityThreshold

protectedinherited

Definition at line 363 of file itkOptImageToImageMetric.h.

template<class TFixedImage, class TMovingImage>

RealType itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >::m_ForegroundValue

private

Definition at line 132 of file itkKappaStatisticImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

GradientImagePointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_GradientImage

protectedinherited

Definition at line 244 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

InterpolatorPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_Interpolator

protectedinherited

Definition at line 241 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_InterpolatorIsBSpline

protectedinherited

Boolean to indicate if the interpolator BSpline.

Definition at line 501 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

MovingImageConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImage

protectedinherited

Definition at line 238 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

MovingImageMaskPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImageMask

mutableprotectedinherited

Definition at line 251 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

MovingImageMaskConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImageMask

protectedinherited

Definition at line 405 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

unsigned long itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_NumberOfFixedImageSamples

protectedinherited

Definition at line 384 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

unsigned long itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_NumberOfParameters

protectedinherited

Definition at line 381 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

unsigned long itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_NumberOfPixelsCounted

mutableprotectedinherited

Definition at line 235 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

unsigned int itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_NumberOfThreads

protectedinherited

Definition at line 407 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

unsigned long itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_NumBSplineWeights

protectedinherited

The number of BSpline transform weights is the number of of parameter in the support region (per dimension ).

Definition at line 427 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

ParametersType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_Parameters

mutableprotectedinherited

Definition at line 382 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

int itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_RandomSeed

protectedinherited

Definition at line 414 of file itkOptImageToImageMetric.h.

InternalReferenceCountType itk::LightObject::m_ReferenceCount

mutableprotectedinherited

Number of uses of this object by other objects.

Definition at line 141 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock

mutableprotectedinherited

Mutex lock to protect modification to the reference count

Definition at line 144 of file itkLightObject.h.

template<class TFixedImage , class TMovingImage >

bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ReseedIterator

protectedinherited

Definition at line 412 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

MultiThreaderType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_Threader

protectedinherited

Definition at line 523 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

BSplineTransformIndexArrayType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ThreaderBSplineTransformIndices

mutableprotectedinherited

Definition at line 481 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

BSplineTransformWeightsType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ThreaderBSplineTransformWeights

mutableprotectedinherited

Definition at line 480 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

unsigned int* itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ThreaderNumberOfMovingImageSamples

mutableprotectedinherited

Definition at line 525 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

MultiThreaderParameterType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ThreaderParameter

protectedinherited

Definition at line 524 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

TransformPointer* itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ThreaderTransform

protectedinherited

Copies of Transform helpers per thread (N-1 of them, since m_Transform will do the work for thread=0.

Definition at line 397 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

TransformPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_Transform

mutableprotectedinherited

Main transform to be used in thread = 0

Definition at line 240 of file itkImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_TransformIsBSpline

protectedinherited

Types and variables related to BSpline deformable transforms. If the transform is of type third order BSplineDeformableTransform, then we can speed up the metric derivative calculation by only inspecting the parameters within the support region of a mapped point. Boolean to indicate if the transform is BSpline deformable.

Definition at line 423 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_UseAllPixels

protectedinherited

Definition at line 409 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_UseCachingOfBSplineWeights

protectedinherited

Definition at line 476 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_UseFixedImageIndexes

protectedinherited

Definition at line 359 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_UseFixedImageSamplesIntensityThreshold

protectedinherited

Definition at line 362 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_UseSequentialSampling

protectedinherited

Definition at line 410 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

BooleanArrayType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_WithinBSplineSupportRegionArray

protectedinherited

Definition at line 471 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_WithinThreadPostProcess

protectedinherited

Definition at line 527 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_WithinThreadPreProcess

protectedinherited

Definition at line 526 of file itkOptImageToImageMetric.h.

template<class TFixedImage , class TMovingImage >

static const unsigned int itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDimension = TMovingImage::ImageDimension

staticinherited

Constants for the image dimensions

Definition at line 88 of file itkImageToImageMetric.h.

---

The documentation for this class was generated from the following files:

• itkKappaStatisticImageToImageMetric.h
• itkKappaStatisticImageToImageMetric.txx