itk::ImageIOBase Class Reference

Abstract superclass defines image IO interface. More...

#include <itkImageIOBase.h>

Inheritance diagram for itk::ImageIOBase:

Collaboration diagram for itk::ImageIOBase:

Classes
class	UnknownType

Public Types
typedef std::vector< std::string >	ArrayOfExtensionsType
typedef vcl_size_t	BufferSizeType
enum	ByteOrder {   BigEndian,   LittleEndian,   OrderNotApplicable }
typedef SmartPointer< const Self >	ConstPointer
enum	FileType {   ASCII,   Binary,   TypeNotApplicable }
typedef long	IndexValueType
enum	IOComponentType {   UNKNOWNCOMPONENTTYPE,   UCHAR,   CHAR,   USHORT,   SHORT,   UINT,   INT,   ULONG,   LONG,   FLOAT,   DOUBLE,   CSHORT,   CINT,   CFLOAT,   CDOUBLE }
enum	IOPixelType {   UNKNOWNPIXELTYPE,   SCALAR,   RGB,   RGBA,   OFFSET,   VECTOR,   POINT,   COVARIANTVECTOR,   SYMMETRICSECONDRANKTENSOR,   DIFFUSIONTENSOR3D,   COMPLEX,   FIXEDARRAY,   MATRIX }
typedef SmartPointer< Self >	Pointer
typedef ImageIOBase	Self
typedef std::streamoff	SizeType
typedef unsigned long	SizeValueType
typedef LightProcessObject	Superclass

Public Member Functions
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual bool	CanReadFile (const char *)=0
virtual bool	CanStreamRead ()
virtual bool	CanStreamWrite ()
virtual bool	CanWriteFile (const char *)=0
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual void	DebugOff () const
virtual void	DebugOn () const
virtual void	Delete ()
virtual ImageIORegion	GenerateStreamableReadRegionFromRequestedRegion (const ImageIORegion &requested) const
virtual const bool &	GetAbortGenerateData ()
virtual unsigned int	GetActualNumberOfSplitsForWriting (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion)
virtual ByteOrder	GetByteOrder () const
std::string	GetByteOrderAsString (ByteOrder) const
Command *	GetCommand (unsigned long tag)
virtual unsigned int	GetComponentSize () const
virtual IOComponentType	GetComponentType () const
std::string	GetComponentTypeAsString (IOComponentType) const
virtual const std::type_info &	GetComponentTypeInfo () const
bool	GetDebug () const
virtual std::vector< double >	GetDefaultDirection (unsigned int i) const
virtual unsigned int	GetDimensions (unsigned int i) const
virtual std::vector< double >	GetDirection (unsigned int i) const
virtual const char *	GetFileName () const
virtual FileType	GetFileType () const
std::string	GetFileTypeAsString (FileType) const
SizeType	GetImageSizeInBytes () const
SizeType	GetImageSizeInComponents () const
SizeType	GetImageSizeInPixels () const
virtual const ImageIORegion &	GetIORegion ()
MetaDataDictionary &	GetMetaDataDictionary (void)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
virtual unsigned long	GetMTime () const
virtual const char *	GetNameOfClass () const
virtual const unsigned int &	GetNumberOfComponents ()
virtual unsigned int	GetNumberOfDimensions () const
virtual double	GetOrigin (unsigned int i) const
virtual SizeType	GetPixelStride () const
virtual IOPixelType	GetPixelType () const
std::string	GetPixelTypeAsString (IOPixelType) const
virtual const float &	GetProgress ()
virtual int	GetReferenceCount () const
virtual double	GetSpacing (unsigned int i) const
virtual ImageIORegion	GetSplitRegionForWriting (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion)
const ArrayOfExtensionsType &	GetSupportedReadExtensions () const
const ArrayOfExtensionsType &	GetSupportedWriteExtensions () const
virtual bool	GetUseCompression () const
virtual bool	GetUseStreamedReading () const
virtual bool	GetUseStreamedWriting () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
void	Print (std::ostream &os, Indent indent=0) const
virtual void	Read (void *buffer)=0
virtual void	ReadImageInformation ()=0
virtual void	Register () const
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
virtual void	SetAbortGenerateData (bool _arg)
virtual void	SetByteOrder (const ByteOrder _arg)
void	SetByteOrderToBigEndian ()
void	SetByteOrderToLittleEndian ()
virtual void	SetComponentType (const IOComponentType _arg)
void	SetDebug (bool debugFlag) const
virtual void	SetDimensions (unsigned int i, unsigned int dim)
virtual void	SetDirection (unsigned int i, std::vector< double > &direction)
virtual void	SetDirection (unsigned int i, vnl_vector< double > &direction)
virtual void	SetFileName (const char *_arg)
virtual void	SetFileType (const FileType _arg)
void	SetFileTypeToASCII ()
void	SetFileTypeToBinary ()
virtual void	SetIORegion (ImageIORegion _arg)
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetNumberOfComponents (unsigned int _arg)
void	SetNumberOfDimensions (unsigned int)
virtual void	SetOrigin (unsigned int i, double origin)
virtual void	SetPixelType (const IOPixelType _arg)
virtual bool	SetPixelTypeInfo (const std::type_info &ptype)
virtual void	SetProgress (float _arg)
virtual void	SetReferenceCount (int)
virtual void	SetSpacing (unsigned int i, double spacing)
virtual void	SetUseCompression (bool _arg)
virtual void	SetUseStreamedReading (bool _arg)
virtual void	SetUseStreamedWriting (bool _arg)
virtual bool	SupportsDimension (unsigned long dim)
virtual void	UnRegister () const
virtual void	UpdateOutputData ()
void	UpdateProgress (float amount)
virtual void	UseCompressionOff ()
virtual void	UseCompressionOn ()
virtual void	UseStreamedReadingOff ()
virtual void	UseStreamedReadingOn ()
virtual void	UseStreamedWritingOff ()
virtual void	UseStreamedWritingOn ()
virtual void	Write (const void *buffer)=0
virtual void	WriteImageInformation ()=0

Static Public Member Functions
static void	BreakOnError ()
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool flag)

Protected Types
typedef int	InternalReferenceCountType

Protected Member Functions
	ImageIOBase ()
	~ImageIOBase ()
void	AddSupportedReadExtension (const char *extension)
void	AddSupportedWriteExtension (const char *extension)
void	ComputeStrides ()
virtual void	GenerateData ()
virtual unsigned int	GetActualNumberOfSplitsForWritingCanStreamWrite (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion) const
SizeType	GetComponentStride () const
virtual unsigned int	GetPixelSize () const
SizeType	GetRowStride () const
SizeType	GetSliceStride () const
virtual ImageIORegion	GetSplitRegionForWritingCanStreamWrite (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion) const
virtual void	PrintHeader (std::ostream &os, Indent indent) const
bool	PrintObservers (std::ostream &os, Indent indent) const
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
void	ReadBufferAsASCII (std::istream &os, void *buffer, IOComponentType ctype, SizeType numberOfBytesToBeRead)
bool	ReadBufferAsBinary (std::istream &os, void *buffer, SizeType numberOfBytesToBeRead)
virtual void	Reset (const bool freeDynamic=true)
void	Resize (const unsigned int numDimensions, const unsigned int *dimensions)
void	WriteBufferAsASCII (std::ostream &os, const void *buffer, IOComponentType ctype, SizeType numberOfBytesToWrite)

Protected Attributes
ByteOrder	m_ByteOrder
IOComponentType	m_ComponentType
std::vector< SizeValueType >	m_Dimensions
std::vector< std::vector < double > >	m_Direction
std::string	m_FileName
FileType	m_FileType
bool	m_Initialized
ImageIORegion	m_IORegion
unsigned int	m_NumberOfComponents
unsigned int	m_NumberOfDimensions
std::vector< double >	m_Origin
IOPixelType	m_PixelType
InternalReferenceCountType	m_ReferenceCount
SimpleFastMutexLock	m_ReferenceCountLock
std::vector< double >	m_Spacing
std::vector< SizeType >	m_Strides
bool	m_UseCompression
bool	m_UseStreamedReading
bool	m_UseStreamedWriting

Private Member Functions
	ImageIOBase (const Self &)
void	operator= (const Self &)

Private Attributes
ArrayOfExtensionsType	m_SupportedReadExtensions
ArrayOfExtensionsType	m_SupportedWriteExtensions

Detailed Description

Abstract superclass defines image IO interface.

ImageIOBase is a class that reads and/or writes image data of a particular format (such as PNG or raw binary). The ImageIOBase encapsulates both the reading and writing of data. The ImageIOBase is used by the ImageFileReader class (to read data) and the ImageFileWriter (to write data) into a single file. The ImageSeriesReader and ImageSeriesWriter classes are used to read and write data (in conjunction with ImageIOBase) when the data is represented by a series of files. Normally the user does not directly manipulate this class other than to instantiate it, set the FileName, and assign it to a ImageFileReader/ImageFileWriter or ImageSeriesReader/ImageSeriesWriter.

A Pluggable factory pattern is used this allows different kinds of readers to be registered (even at run time) without having to modify the code in this class.

See Also

ImageFileWriter

ImageFileReader

ImageSeriesWriter

ImageSeriesReader

Definition at line 58 of file itkImageIOBase.h.

Member Typedef Documentation

typedef std::vector< std::string > itk::ImageIOBase::ArrayOfExtensionsType

Type for the list of strings to be used for extensions.

Definition at line 388 of file itkImageIOBase.h.

typedef vcl_size_t itk::ImageIOBase::BufferSizeType

Type for representing size of bytes, and or positions along a memory buffer

Definition at line 256 of file itkImageIOBase.h.

typedef SmartPointer<const Self> itk::LightProcessObject::ConstPointer

inherited

Definition at line 78 of file itkLightProcessObject.h.

typedef long itk::ImageIOBase::IndexValueType

Types for managing image size and image index components.

Definition at line 71 of file itkImageIOBase.h.

typedef int itk::LightObject::InternalReferenceCountType

protectedinherited

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 137 of file itkLightObject.h.

typedef SmartPointer<Self> itk::ImageIOBase::Pointer

Definition at line 64 of file itkImageIOBase.h.

typedef ImageIOBase itk::ImageIOBase::Self

Standard class typedefs.

Definition at line 62 of file itkImageIOBase.h.

typedef std::streamoff itk::ImageIOBase::SizeType

Type for representing size of bytes, and or positions along a file

Definition at line 253 of file itkImageIOBase.h.

typedef unsigned long itk::ImageIOBase::SizeValueType

Definition at line 75 of file itkImageIOBase.h.

typedef LightProcessObject itk::ImageIOBase::Superclass

Definition at line 63 of file itkImageIOBase.h.

Member Enumeration Documentation

enum itk::ImageIOBase::ByteOrder

Enums used to specify byte order; whether Big Endian or Little Endian. Some subclasses use this, some ignore it.

Enumerator
BigEndian
LittleEndian
OrderNotApplicable

Definition at line 207 of file itkImageIOBase.h.

enum itk::ImageIOBase::FileType

Enums used to specify write style: whether binary or ASCII. Some subclasses use this, some ignore it.

Enumerator
ASCII
Binary
TypeNotApplicable

Definition at line 203 of file itkImageIOBase.h.

enum itk::ImageIOBase::IOComponentType

Enums used to manipulate the component type. The component type refers to the actual storage class associated with either a SCALAR pixel type or elements of a compound pixel.

Enumerator
UNKNOWNCOMPONENTTYPE
UCHAR
CHAR
USHORT
SHORT
UINT
INT
ULONG
LONG
FLOAT
DOUBLE
CSHORT
CINT
CFLOAT
CDOUBLE

Definition at line 94 of file itkImageIOBase.h.

enum itk::ImageIOBase::IOPixelType

Enums used to manipulate the pixel type. The pixel type provides context for automatic data conversions (for instance, RGB to SCALAR, VECTOR to SCALAR).

Enumerator
UNKNOWNPIXELTYPE
SCALAR
RGB
RGBA
OFFSET
VECTOR
POINT
COVARIANTVECTOR
SYMMETRICSECONDRANKTENSOR
DIFFUSIONTENSOR3D
COMPLEX
FIXEDARRAY
MATRIX

Definition at line 86 of file itkImageIOBase.h.

Constructor & Destructor Documentation

itk::ImageIOBase::ImageIOBase ( )

protected

Definition at line 35 of file itkImageIOBase.cxx.

References Reset().

itk::ImageIOBase::~ImageIOBase ( )

protected

Definition at line 62 of file itkImageIOBase.cxx.

itk::ImageIOBase::ImageIOBase ( const Self &  )

private

Member Function Documentation

virtual void itk::LightProcessObject::AbortGenerateDataOff ( )

virtualinherited

virtual void itk::LightProcessObject::AbortGenerateDataOn ( )

virtualinherited

Turn on and off the AbortGenerateData flag.

unsigned long itk::Object::AddObserver ( const EventObject &  event, Command *  cmd  )

inherited

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

Definition at line 389 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), itk::ProgressAccumulator::RegisterInternalFilter(), otb::ImageFileWriter< TInputImage >::Update(), and otb::WriterWatcherBase::WriterWatcherBase().

unsigned long itk::Object::AddObserver ( const EventObject &  event, Command *  cmd  ) const

inherited

Definition at line 401 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

void itk::ImageIOBase::AddSupportedReadExtension ( const char *  extension )

protected

Insert an extension to the list of supported extensions for reading.

Definition at line 78 of file itkImageIOBase.cxx.

References m_SupportedReadExtensions.

Referenced by itk::AnalyzeImageIO::AnalyzeImageIO(), itk::BioRadImageIO::BioRadImageIO(), itk::BMPImageIO::BMPImageIO(), itk::PNGImageIO::CanReadFile(), itk::JPEGImageIO::JPEGImageIO(), itk::LSMImageIO::LSMImageIO(), itk::MetaImageIO::MetaImageIO(), itk::MRCImageIO::MRCImageIO(), itk::NiftiImageIO::NiftiImageIO(), itk::TIFFImageIO::TIFFImageIO(), and itk::VTKImageIO2::VTKImageIO2().

void itk::ImageIOBase::AddSupportedWriteExtension ( const char *  extension )

protected

Insert an extension to the list of supported extensions for writing.

Definition at line 83 of file itkImageIOBase.cxx.

References m_SupportedWriteExtensions.

Referenced by itk::AnalyzeImageIO::AnalyzeImageIO(), itk::BioRadImageIO::BioRadImageIO(), itk::BMPImageIO::BMPImageIO(), itk::PNGImageIO::CanReadFile(), itk::JPEGImageIO::JPEGImageIO(), itk::LSMImageIO::LSMImageIO(), itk::MetaImageIO::MetaImageIO(), itk::MRCImageIO::MRCImageIO(), itk::NiftiImageIO::NiftiImageIO(), itk::TIFFImageIO::TIFFImageIO(), and itk::VTKImageIO2::VTKImageIO2().

void itk::LightObject::BreakOnError ( )

staticinherited

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

Definition at line 149 of file itkLightObject.cxx.

virtual bool itk::ImageIOBase::CanReadFile ( const char *  )

pure virtual

Determine the file type. Returns true if this ImageIO can read the file specified.

Implemented in itk::Bruker2DSEQImageIO, itk::AnalyzeImageIO, itk::PhilipsRECImageIO, itk::RawImageIO< TPixel, VImageDimension >, itk::GDCMImageIO, itk::Brains2MaskImageIO, itk::IPLCommonImageIO, itk::MINC2ImageIO, itk::MRCImageIO, itk::StimulateImageIO, itk::GE5ImageIO, itk::GE4ImageIO, itk::GEAdwImageIO, itk::SiemensVisionImageIO, itk::VoxBoCUBImageIO, itk::NiftiImageIO, itk::MetaImageIO, itk::JPEGImageIO, itk::NrrdImageIO, itk::VTKImageIO2, itk::BioRadImageIO, itk::GiplImageIO, itk::PNGImageIO, itk::VTKImageIO, itk::BMPImageIO, itk::LSMImageIO, itk::TIFFImageIO, and itk::DICOMImageIO2.

virtual bool itk::ImageIOBase::CanStreamRead ( void  )

inlinevirtual

Determine if the ImageIO can stream reading from this file. Default is false.

Reimplemented in itk::MetaImageIO, and itk::StreamingImageIOBase.

Definition at line 292 of file itkImageIOBase.h.

virtual bool itk::ImageIOBase::CanStreamWrite ( void  )

inlinevirtual

Determine if the ImageIO can stream writing to this file. Default is false.

There are two types of non exclusive streaming: pasteing subregions, and iterative If true then

Reimplemented in itk::MetaImageIO, and itk::StreamingImageIOBase.

Definition at line 316 of file itkImageIOBase.h.

Referenced by GetActualNumberOfSplitsForWriting(), and GetSplitRegionForWriting().

virtual bool itk::ImageIOBase::CanWriteFile ( const char *  )

pure virtual

Determine the file type. Returns true if this ImageIO can read the file specified.

Implemented in itk::Bruker2DSEQImageIO, itk::AnalyzeImageIO, itk::PhilipsRECImageIO, itk::RawImageIO< TPixel, VImageDimension >, itk::IPLCommonImageIO, itk::GDCMImageIO, itk::Brains2MaskImageIO, itk::MRCImageIO, itk::MINC2ImageIO, itk::StimulateImageIO, itk::NiftiImageIO, itk::VoxBoCUBImageIO, itk::MetaImageIO, itk::JPEGImageIO, itk::PNGImageIO, itk::TIFFImageIO, itk::VTKImageIO2, itk::NrrdImageIO, itk::BioRadImageIO, itk::DICOMImageIO2, itk::GiplImageIO, itk::VTKImageIO, itk::BMPImageIO, and itk::LSMImageIO.

void itk::ImageIOBase::ComputeStrides ( )

protected

Calculates the different strides (distance from one thing to the next). Upon return, strides[0] = bytes to get to the next component of a pixel, strides[1] = bytes to get to the next pixel in x direction, strides[2] = bytes to get to the next row in y direction, strides[3] = bytes to get to the next slice in z direction, etc.

Definition at line 540 of file itkImageIOBase.cxx.

References GetComponentSize(), m_Dimensions, m_NumberOfComponents, m_NumberOfDimensions, and m_Strides.

Referenced by itk::MINC2ImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), and Resize().

virtual::itk::LightObject::Pointer itk::LightProcessObject::CreateAnother ( void  ) const

virtualinherited

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

Reimplemented in itk::PhilipsPAR, itk::Bruker2DSEQImageIO, itk::AnalyzeImageIO, itk::PolygonGroupSpatialObjectXMLFileWriter, itk::Statistics::SampleClassifier< TSample >, itk::Statistics::SampleClassifier< itk::Statistics::ListSample< TInputImage::PixelType > >, itk::GDCMImageIO, itk::Statistics::SampleClassifierWithMask< TSample, TMaskSample >, itk::Brains2MaskImageIO, itk::IPLCommonImageIO, itk::MINC2ImageIO, itk::StimulateImageIO, itk::MRCImageIO, itk::PhilipsRECImageIO, itk::VoxBoCUBImageIO, itk::GE5ImageIO, itk::GE4ImageIO, itk::GEAdwImageIO, itk::RawImageIO< TPixel, VImageDimension >, itk::SiemensVisionImageIO, itk::NiftiImageIO, itk::PolygonGroupSpatialObjectXMLFileReader, itk::Statistics::ErrorBackPropagationLearningFunctionBase< LayerType, TTargetVector >, itk::TransformFileReader, itk::Statistics::ErrorBackPropagationLearningWithMomentum< LayerType, TTargetVector >, itk::VTKImageIO2, itk::TransformFileWriter, itk::Statistics::QuickPropLearningRule< LayerType, TTargetVector >, itk::BioRadImageIO, itk::GiplImageIO, itk::VTKImageIO, itk::BMPImageIO, itk::DicomImageIO, itk::NrrdImageIO, itk::LSMImageIO, itk::MetaImageIO, itk::TIFFImageIO, itk::Statistics::RBFLayer< TMeasurementVector, TTargetVector >, itk::JPEGImageIO, itk::PNGImageIO, itk::Statistics::RBFBackPropagationLearningFunction< LayerType, TTargetVector >, itk::Statistics::TrainingFunctionBase< TSample, TTargetVector, ScalarType >, itk::TransformFileWriter, itk::MetaArrayWriter, itk::Statistics::IterativeSupervisedTrainingFunction< TSample, TTargetVector, ScalarType >, itk::DICOMImageIO2, itk::MetaArrayReader, itk::Statistics::BatchSupervisedTrainingFunction< TSample, TTargetVector, ScalarType >, itk::TransformFileReader, itk::Statistics::BackPropagationLayer< TMeasurementVector, TTargetVector >, itk::Statistics::CompletelyConnectedWeightSet< TMeasurementVector, TTargetVector >, itk::MatlabTransformIO, and itk::TxtTransformIO.

Referenced by itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting().

void itk::Object::DebugOff ( ) const

virtualinherited

Turn debugging output off.

Definition at line 253 of file itkObject.cxx.

void itk::Object::DebugOn ( ) const

virtualinherited

Turn debugging output on.

Definition at line 242 of file itkObject.cxx.

void itk::LightObject::Delete ( )

virtualinherited

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Delete a itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C++ delete method will not work with reference counting.

Definition at line 88 of file itkLightObject.cxx.

virtual void itk::LightProcessObject::GenerateData ( void  )

inlineprotectedvirtualinherited

This method causes the filter to generate its output.

Reimplemented in itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >, itk::ClassifierBase< TDataContainer >, itk::ClassifierBase< TInputImage >, itk::ClassifierBase< TSample >, itk::ClassifierBase< itk::Statistics::ListSample< TInputImage::PixelType > >, itk::ImageClassifierBase< TInputImage, TClassifiedImage >, itk::LevelSetNeighborhoodExtractor< TLevelSet >, itk::ImageModelEstimatorBase< TInputImage, TMembershipFunction >, itk::ImageGaussianModelEstimator< TInputImage, TMembershipFunction, TTrainingImage >, itk::Statistics::SampleClassifier< TSample >, itk::Statistics::SampleClassifier< itk::Statistics::ListSample< TInputImage::PixelType > >, otb::SVMClassifier< TSample, TLabel >, itk::Statistics::SampleClassifierWithMask< TSample, TMaskSample >, and otb::SVMMarginSampler< TSample, TModel >.

Definition at line 121 of file itkLightProcessObject.h.

ImageIORegion itk::ImageIOBase::GenerateStreamableReadRegionFromRequestedRegion ( const ImageIORegion &  requested ) const

virtual

Method for supporting streaming. Given a requested region, determine what could be the region that we can read from the file. This is called the streamable region, which will be equal or smaller than the LargestPossibleRegion (unless it was dimensionaly clipped) and greater or equal to the RequestedRegion

the resulting IORegion may be a greater dimensions the the requested IORegion, if the the derived class is unable to read the requested region. For example if the file has a size of [ 10, 10, 10] but the requested region is [10, 10] the return may be 3 dimensions.

Given a requested region, determine what could be the region that we can read from the file. This is called the streamable region, which will be smaller than the LargestPossibleRegion and greater or equal to the RequestedRegion

Reimplemented in itk::MetaImageIO, itk::NiftiImageIO, and itk::StreamingImageIOBase.

Definition at line 1218 of file itkImageIOBase.cxx.

References itk::ImageIORegion::GetImageDimension(), itk::ImageIORegion::SetIndex(), and itk::ImageIORegion::SetSize().

virtual const bool& itk::LightProcessObject::GetAbortGenerateData ( )

virtualinherited

Get the AbortGenerateData flag for the process object. Process objects may handle premature termination of execution in different ways.

unsigned int itk::ImageIOBase::GetActualNumberOfSplitsForWriting ( unsigned int  numberOfRequestedSplits, const ImageIORegion &  pasteRegion, const ImageIORegion &  largestPossibleRegion  )

virtual

Before this method is called all the configuration will be done, that is Streaming/PasteRegion/Compression/Filename etc If pasting is being used the number of requested splits is for that region not the largest. The derived ImageIO class should verify that the file is capable of being writen with this configuration. If pasted is enabled and is not support or does not work with the file, then an excepetion should be thrown.

The default implementation depends on CanStreamWrite. If false then 1 is returned (unless pasting is indicated), so that the whole file will be updated in one region. If true then its assumed that any arbitrary region can be writen to any file. So the users request will be respected. If a derived class has more restictive conditions then they should be checked

Reimplemented in itk::MetaImageIO, and itk::StreamingImageIOBase.

Definition at line 1122 of file itkImageIOBase.cxx.

References CanStreamWrite(), GetActualNumberOfSplitsForWritingCanStreamWrite(), and GetFileName().

unsigned int itk::ImageIOBase::GetActualNumberOfSplitsForWritingCanStreamWrite ( unsigned int  numberOfRequestedSplits, const ImageIORegion &  pasteRegion  ) const

protectedvirtual

an implementation of ImageRegionSplitter:GetNumberOfSplits

Definition at line 1093 of file itkImageIOBase.cxx.

References itk::ImageIORegion::GetImageDimension(), itk::ImageIORegion::GetSize(), and itk::value_type().

Referenced by itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), and GetActualNumberOfSplitsForWriting().

virtual ByteOrder itk::ImageIOBase::GetByteOrder ( ) const

virtual

Referenced by itk::NrrdImageIO::Write().

std::string itk::ImageIOBase::GetByteOrderAsString

(

ByteOrder

t

)

const

Convenience method returns the ByteOrder as a string. This can be used for writing output files.

Definition at line 739 of file itkImageIOBase.cxx.

References BigEndian, LittleEndian, and OrderNotApplicable.

Referenced by PrintSelf().

Command * itk::Object::GetCommand ( unsigned long  tag )

inherited

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

Definition at line 414 of file itkObject.cxx.

References itk::Object::GetCommand(), and NULL.

Referenced by itk::Object::GetCommand().

unsigned int itk::ImageIOBase::GetComponentSize ( ) const

virtual

Compute the size (in bytes) of the components of a pixel. For example, and RGB pixel of unsigned char would have a component size of 1 byte. This method can be invoked only after the component type is set.

Reimplemented in itk::IPLCommonImageIO.

Definition at line 683 of file itkImageIOBase.cxx.

References CDOUBLE, CFLOAT, CHAR, CINT, CSHORT, DOUBLE, FLOAT, INT, LONG, m_ComponentType, SHORT, UCHAR, UINT, ULONG, UNKNOWNCOMPONENTTYPE, and USHORT.

Referenced by ComputeStrides(), GetPixelSize(), itk::VTKImageIO::Read(), itk::VTKImageIO2::Read(), itk::VTKImageIO::Write(), and itk::VTKImageIO2::Write().

ImageIOBase::SizeType itk::ImageIOBase::GetComponentStride ( ) const

protected

Convenient method for accessing number of bytes to get to the next pixel component. Returns m_Strides[0].

Definition at line 584 of file itkImageIOBase.cxx.

virtual IOComponentType itk::ImageIOBase::GetComponentType ( ) const

virtual

Referenced by itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::TIFFImageIO::InternalWrite(), itk::BioRadImageIO::Read(), itk::VTKImageIO::Read(), itk::VTKImageIO2::Read(), itk::StimulateImageIO::Read(), SetPixelTypeInfo(), itk::MRCImageIO::UpdateHeaderFromImageIO(), itk::LSMImageIO::Write(), itk::BioRadImageIO::Write(), itk::VTKImageIO::Write(), itk::VTKImageIO2::Write(), itk::JPEGImageIO::Write(), itk::StimulateImageIO::Write(), itk::MINC2ImageIO::Write(), itk::GDCMImageIO::Write(), itk::VTKImageIO2::WriteImageInformation(), and itk::PNGImageIO::WriteSlice().

std::string itk::ImageIOBase::GetComponentTypeAsString

(

IOComponentType

t

)

const

Convenience method returns the IOComponentType as a string. This can be used for writing output files.

Definition at line 755 of file itkImageIOBase.cxx.

References CDOUBLE, CFLOAT, CHAR, CINT, CSHORT, DOUBLE, FLOAT, INT, LONG, SHORT, UCHAR, UINT, ULONG, UNKNOWNCOMPONENTTYPE, and USHORT.

Referenced by itk::GDCMImageIO::PrintSelf(), PrintSelf(), itk::NiftiImageIO::Read(), itk::MRCImageIO::UpdateHeaderFromImageIO(), itk::VTKImageIO::Write(), and itk::VTKImageIO2::WriteImageInformation().

const std::type_info & itk::ImageIOBase::GetComponentTypeInfo ( ) const

virtual

Reimplemented in itk::IPLCommonImageIO.

Definition at line 183 of file itkImageIOBase.cxx.

References CDOUBLE, CFLOAT, CHAR, CINT, CSHORT, DOUBLE, FLOAT, INT, LONG, m_ComponentType, SHORT, UCHAR, UINT, ULONG, UNKNOWNCOMPONENTTYPE, and USHORT.

bool itk::Object::GetDebug ( ) const

inherited

Get the value of the debug flag.

Definition at line 264 of file itkObject.cxx.

Referenced by otb::ogr::ImageReference< double >::GetDebug().

std::vector< double > itk::ImageIOBase::GetDefaultDirection ( unsigned int  k ) const

virtual

Return the directions to be assigned by default to recipient images whose dimension is smaller than the image dimension in file.

Return the directions that this particular ImageIO would use by default in the case the recipient image dimension is smaller than the dimension of the image in file.

Reimplemented in itk::AnalyzeImageIO.

Definition at line 1276 of file itkImageIOBase.cxx.

Referenced by itk::AnalyzeImageIO::GetDefaultDirection().

virtual unsigned int itk::ImageIOBase::GetDimensions ( unsigned int  i ) const

inlinevirtual

Definition at line 107 of file itkImageIOBase.h.

Referenced by itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::NrrdImageIO::Read(), itk::MetaImageIO::Read(), itk::MINC2ImageIO::Read(), itk::StreamingImageIOBase::RequestedToStream(), itk::MINC2ImageIO::SetSliceScalingFromLocalScaling(), itk::StreamingImageIOBase::StreamWriteBufferAsBinary(), itk::NrrdImageIO::Write(), itk::VTKImageIO::Write(), itk::MINC2ImageIO::Write(), itk::VTKImageIO2::WriteImageInformation(), and itk::PNGImageIO::WriteSlice().

virtual std::vector<double> itk::ImageIOBase::GetDirection ( unsigned int  i ) const

inlinevirtual

Reimplemented in itk::AnalyzeImageIO.

Definition at line 130 of file itkImageIOBase.h.

Referenced by itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::AnalyzeImageIO::GetDirection(), itk::NiftiImageIO::SetNIfTIOrientationFromImageIO(), and itk::NrrdImageIO::Write().

virtual const char* itk::ImageIOBase::GetFileName ( ) const

virtual

Referenced by itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), GetActualNumberOfSplitsForWriting(), itk::TIFFImageIO::InternalWrite(), itk::PNGImageIO::Read(), itk::JPEGImageIO::Read(), itk::NrrdImageIO::Read(), itk::MetaImageIO::Read(), itk::NiftiImageIO::Read(), itk::BMPImageIO::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), itk::JPEGImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::IPLCommonImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::NiftiImageIO::SetImageIOMetadataFromNIfTI(), itk::NrrdImageIO::Write(), and itk::PNGImageIO::WriteSlice().

virtual FileType itk::ImageIOBase::GetFileType ( ) const

virtual

Referenced by itk::VTKImageIO::InternalReadImageInformation(), itk::VTKImageIO2::InternalReadImageInformation(), itk::NrrdImageIO::Write(), itk::VTKImageIO::Write(), and itk::VTKImageIO2::WriteImageInformation().

std::string itk::ImageIOBase::GetFileTypeAsString

(

FileType

t

)

const

Convenience method returns the FileType as a string. This can be used for writing output files.

Definition at line 723 of file itkImageIOBase.cxx.

References ASCII, Binary, and TypeNotApplicable.

Referenced by PrintSelf().

bool itk::Object::GetGlobalWarningDisplay ( )

staticinherited

Get the value of the global debug output control flag.

Definition at line 381 of file itkObject.cxx.

ImageIOBase::SizeType itk::ImageIOBase::GetImageSizeInBytes

(

)

const

Return the number of bytes in the image.

Definition at line 577 of file itkImageIOBase.cxx.

Referenced by itk::BioRadImageIO::Read(), itk::GiplImageIO::Read(), itk::VTKImageIO::Read(), itk::VTKImageIO2::Read(), itk::VoxBoCUBImageIO::Read(), itk::StimulateImageIO::Read(), itk::PhilipsRECImageIO::Read(), itk::AnalyzeImageIO::Read(), itk::Bruker2DSEQImageIO::Read(), itk::DICOMImageIO2::ReadDataCallback(), itk::BioRadImageIO::Write(), itk::VTKImageIO::Write(), itk::VTKImageIO2::Write(), itk::StimulateImageIO::Write(), and itk::GDCMImageIO::Write().

ImageIOBase::SizeType itk::ImageIOBase::GetImageSizeInComponents

(

)

const

Return the number of pixels times the number of components in the image.

Definition at line 570 of file itkImageIOBase.cxx.

Referenced by itk::BioRadImageIO::Read(), itk::VTKImageIO::Read(), itk::VTKImageIO2::Read(), itk::NiftiImageIO::Read(), itk::StimulateImageIO::Read(), itk::BioRadImageIO::Write(), itk::VTKImageIO::Write(), itk::VTKImageIO2::Write(), and itk::StimulateImageIO::Write().

ImageIOBase::SizeType itk::ImageIOBase::GetImageSizeInPixels

(

)

const

Return the number of pixels in the image.

Definition at line 555 of file itkImageIOBase.cxx.

Referenced by itk::MetaImageIO::Read(), itk::AnalyzeImageIO::Read(), itk::VTKImageIO::Write(), and itk::VTKImageIO2::WriteImageInformation().

virtual const ImageIORegion& itk::ImageIOBase::GetIORegion ( )

virtual

Referenced by itk::NiftiImageIO::Read(), itk::StreamingImageIOBase::RequestedToStream(), and itk::VTKImageIO::Write().

MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  )

inherited

Returns

A reference to this objects MetaDataDictionary.

Warning

This reference may be changed.

Definition at line 532 of file itkObject.cxx.

References NULL.

Referenced by otb::RenderingImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData(), itk::Brains2MaskImageIO::CanReadFile(), otb::DataNode< TPrecision, VDimension, TValuePrecision >::CopyFieldList(), otb::VectorImage< TPixel, VImageDimension >::CopyInformation(), otb::Image< TPixel, VImageDimension >::CopyInformation(), itk::GDCMImageIO::GetBodyPart(), itk::GDCMImageIO::GetInstitution(), itk::GDCMImageIO::GetManufacturer(), itk::GDCMImageIO::GetModality(), itk::GDCMImageIO::GetModel(), itk::GDCMImageIO::GetNumberOfSeriesInStudy(), itk::GDCMImageIO::GetNumberOfStudyRelatedSeries(), itk::GDCMImageIO::GetPatientAge(), itk::GDCMImageIO::GetPatientDOB(), itk::GDCMImageIO::GetPatientID(), itk::GDCMImageIO::GetPatientName(), itk::GDCMImageIO::GetPatientSex(), itk::GDCMImageIO::GetScanOptions(), itk::GDCMImageIO::GetStudyDate(), itk::GDCMImageIO::GetStudyDescription(), itk::GDCMImageIO::GetStudyID(), itk::GDCMImageIO::GetValueFromTag(), otb::GDALImageIO::InternalReadImageInformation(), itk::GDCMImageIO::InternalReadImageInformation(), otb::GDALImageIO::InternalWriteImageInformation(), otb::RAMDrivenAdaptativeStreamingManager< TImage >::PrepareStreaming(), itk::DICOMImageIO2::Read(), itk::DICOMImageIO2::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), otb::JPEG2000ImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), itk::MRCImageIO::ReadImageInformation(), itk::IPLCommonImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), otb::ImageMetadataInterfaceBase::SetImage(), itk::NiftiImageIO::SetImageIOMetadataFromNIfTI(), otb::VectorDataToLabelImageFilter< TVectorData, TOutputImage >::SetOutputParametersFromImage(), itk::NrrdImageIO::Write(), itk::GDCMImageIO::Write(), and itk::PolygonGroupSpatialObjectXMLFileWriter::WriteFile().

const MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void  ) const

inherited

Returns

A constant reference to this objects MetaDataDictionary.

Definition at line 543 of file itkObject.cxx.

References NULL.

unsigned long itk::Object::GetMTime ( void  ) const

virtualinherited

Return this objects modified time.

Return the modification for this object.

Reimplemented in itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::SpatialObject< TDimension >, itk::SpatialObject< 3 >, itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, otb::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::MeshSpatialObject< TMesh >, and itk::SceneSpatialObject< TSpaceDimension >.

Definition at line 286 of file itkObject.cxx.

Referenced by itk::DeformationFieldSource< TOutputImage >::GetMTime(), itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >::GetMTime(), itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), otb::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< TDimension >::GetMTime(), itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime(), otb::Function::NoStretchRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), itk::VTKImageExportBase::PipelineModifiedCallback(), and itk::ProcessObject::UpdateOutputInformation().

virtual const char* itk::ImageIOBase::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::LightProcessObject.

Reimplemented in itk::Bruker2DSEQImageIO, itk::AnalyzeImageIO, itk::GDCMImageIO, itk::Brains2MaskImageIO, itk::IPLCommonImageIO, itk::MINC2ImageIO, itk::StimulateImageIO, itk::MRCImageIO, itk::PhilipsRECImageIO, itk::VoxBoCUBImageIO, itk::GE5ImageIO, itk::GE4ImageIO, itk::GEAdwImageIO, itk::RawImageIO< TPixel, VImageDimension >, itk::SiemensVisionImageIO, itk::NiftiImageIO, itk::StreamingImageIOBase, itk::VTKImageIO2, itk::BioRadImageIO, itk::GiplImageIO, itk::VTKImageIO, itk::BMPImageIO, itk::DicomImageIO, itk::NrrdImageIO, itk::LSMImageIO, itk::MetaImageIO, itk::TIFFImageIO, itk::JPEGImageIO, itk::PNGImageIO, and itk::DICOMImageIO2.

Referenced by itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::GenerateOutputInformation(), and itk::ImageFileWriter< TInputImage >::Write().

virtual const unsigned int& itk::ImageIOBase::GetNumberOfComponents ( )

virtual

Referenced by itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), GetPixelSize(), itk::TIFFImageIO::InternalWrite(), itk::BMPImageIO::Read(), itk::NrrdImageIO::Read(), itk::NiftiImageIO::Read(), itk::PNGImageIO::ReadImageInformation(), itk::JPEGImageIO::ReadImageInformation(), itk::NrrdImageIO::SupportsDimension(), itk::LSMImageIO::Write(), itk::NrrdImageIO::Write(), itk::VTKImageIO::Write(), itk::MINC2ImageIO::Write(), itk::GDCMImageIO::Write(), itk::VTKImageIO2::WriteImageInformation(), itk::PNGImageIO::WriteSlice(), and itk::JPEGImageIO::WriteSlice().

virtual unsigned int itk::ImageIOBase::GetNumberOfDimensions ( ) const

virtual

Referenced by itk::Brains2MaskImageIO::CanReadFile(), itk::ImageSeriesReader< TOutputImage >::ComputeMovingDimensionIndex(), itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::VTKImageIO2::InternalReadImageInformation(), itk::PNGImageIO::Read(), itk::GiplImageIO::Read(), itk::NrrdImageIO::Read(), itk::MetaImageIO::Read(), itk::NiftiImageIO::Read(), itk::PhilipsRECImageIO::Read(), itk::Bruker2DSEQImageIO::Read(), itk::MetaImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), itk::StreamingImageIOBase::RequestedToStream(), itk::MRCImageIO::UpdateHeaderFromImageIO(), itk::NrrdImageIO::Write(), itk::BioRadImageIO::Write(), itk::VTKImageIO::Write(), itk::JPEGImageIO::Write(), itk::StimulateImageIO::Write(), and itk::VTKImageIO2::WriteImageInformation().

virtual double itk::ImageIOBase::GetOrigin ( unsigned int  i ) const

inlinevirtual

Definition at line 113 of file itkImageIOBase.h.

Referenced by itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::NiftiImageIO::SetNIfTIOrientationFromImageIO(), itk::NrrdImageIO::Write(), itk::MINC2ImageIO::Write(), and itk::VTKImageIO2::WriteImageInformation().

unsigned int itk::ImageIOBase::GetPixelSize ( ) const

protectedvirtual

Compute the size (in bytes) of the pixel. For example, and RGB pixel of unsigned char would have size 3 bytes.

Definition at line 669 of file itkImageIOBase.cxx.

References GetComponentSize(), GetNumberOfComponents(), m_ComponentType, m_PixelType, UNKNOWNCOMPONENTTYPE, and UNKNOWNPIXELTYPE.

Referenced by itk::StreamingImageIOBase::StreamWriteBufferAsBinary().

ImageIOBase::SizeType itk::ImageIOBase::GetPixelStride ( ) const

virtual

Convenient method for accessing the number of bytes to get to the next pixel. Returns m_Strides[1];

Please note that this methods depends the private methods ComputeStrides being called, otherwise this is the incorrect value.

Definition at line 591 of file itkImageIOBase.cxx.

virtual IOPixelType itk::ImageIOBase::GetPixelType ( ) const

virtual

Referenced by itk::AnalyzeImageIO::DefineHeaderObjectDataType(), itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::NrrdImageIO::Read(), itk::NiftiImageIO::Read(), SetPixelTypeInfo(), itk::MRCImageIO::UpdateHeaderFromImageIO(), itk::NrrdImageIO::Write(), itk::VTKImageIO::Write(), and itk::VTKImageIO2::WriteImageInformation().

std::string itk::ImageIOBase::GetPixelTypeAsString

(

IOPixelType

t

)

const

Convenience method returns the IOPixelType as a string. This can be used for writing output files.

Definition at line 796 of file itkImageIOBase.cxx.

References COMPLEX, COVARIANTVECTOR, DIFFUSIONTENSOR3D, OFFSET, POINT, RGB, RGBA, SCALAR, SYMMETRICSECONDRANKTENSOR, UNKNOWNPIXELTYPE, and VECTOR.

Referenced by PrintSelf(), and itk::MRCImageIO::UpdateHeaderFromImageIO().

virtual const float& itk::LightProcessObject::GetProgress ( )

virtualinherited

Get the execution progress of a process object. The progress is a floating number between (0,1), 0 meaning no progress; 1 meaning the filter has completed execution.

virtual int itk::LightObject::GetReferenceCount ( ) const

inlinevirtualinherited

Gets the reference count on this object.

Definition at line 105 of file itkLightObject.h.

ImageIOBase::SizeType itk::ImageIOBase::GetRowStride ( ) const

protected

Convenient method for accessing the number of bytes to get to the next row. Returns m_Strides[2].

Definition at line 598 of file itkImageIOBase.cxx.

ImageIOBase::SizeType itk::ImageIOBase::GetSliceStride ( ) const

protected

Convenient method for accessing the number of bytes to get to the next slice. Returns m_Strides[3].

Definition at line 605 of file itkImageIOBase.cxx.

virtual double itk::ImageIOBase::GetSpacing ( unsigned int  i ) const

inlinevirtual

Definition at line 121 of file itkImageIOBase.h.

Referenced by itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::NiftiImageIO::SetNIfTIOrientationFromImageIO(), itk::NrrdImageIO::Write(), itk::MINC2ImageIO::Write(), and itk::VTKImageIO2::WriteImageInformation().

ImageIORegion itk::ImageIOBase::GetSplitRegionForWriting ( unsigned int  ithPiece, unsigned int  numberOfActualSplits, const ImageIORegion &  pasteRegion, const ImageIORegion &  largestPossibleRegion  )

virtual

returns the ith IORegion

numberOfActualSplits should be the value returned from GetActualNumberOfSplitsForWriting with the same parameters

Derieved classes should overload this method to return a compatible region

Reimplemented in itk::MetaImageIO.

Definition at line 1200 of file itkImageIOBase.cxx.

References CanStreamWrite(), and GetSplitRegionForWritingCanStreamWrite().

ImageIORegion itk::ImageIOBase::GetSplitRegionForWritingCanStreamWrite ( unsigned int  ithPiece, unsigned int  numberOfActualSplits, const ImageIORegion &  pasteRegion  ) const

protectedvirtual

an implementation of ImageRegionSplitter:GetSplit

Definition at line 1143 of file itkImageIOBase.cxx.

References itk::ImageIORegion::GetImageDimension(), itk::ImageIORegion::GetIndex(), itk::ImageIORegion::GetSize(), itk::ImageIORegion::SetIndex(), itk::ImageIORegion::SetSize(), and itk::value_type().

Referenced by itk::MetaImageIO::GetSplitRegionForWriting(), and GetSplitRegionForWriting().

const ImageIOBase::ArrayOfExtensionsType & itk::ImageIOBase::GetSupportedReadExtensions

(

)

const

This method returns an array with the list of filename extensions supported for reading by this ImageIO class. This is intended to facilitate GUI and application level integration.

Definition at line 73 of file itkImageIOBase.cxx.

References m_SupportedReadExtensions.

const ImageIOBase::ArrayOfExtensionsType & itk::ImageIOBase::GetSupportedWriteExtensions

(

)

const

This method returns an array with the list of filename extensions supported for writing by this ImageIO class. This is intended to facilitate GUI and application level integration.

Definition at line 67 of file itkImageIOBase.cxx.

References m_SupportedWriteExtensions.

virtual bool itk::ImageIOBase::GetUseCompression ( ) const

virtual

Referenced by itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), and itk::NrrdImageIO::Write().

virtual bool itk::ImageIOBase::GetUseStreamedReading ( ) const

virtual

virtual bool itk::ImageIOBase::GetUseStreamedWriting ( ) const

virtual

static void itk::Object::GlobalWarningDisplayOff ( )

inlinestaticinherited

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

Referenced by itk::OutputWindow::DisplayText(), itk::Win32OutputWindow::PromptText(), and itk::Win32OutputWindow::WndProc().

static void itk::Object::GlobalWarningDisplayOn ( )

inlinestaticinherited

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

bool itk::Object::HasObserver ( const EventObject &  event ) const

inherited

Return true if an observer is registered for this event.

Definition at line 467 of file itkObject.cxx.

void itk::Object::InvokeEvent ( const EventObject &  event )

inherited

Call Execute on all the Commands observing this event id.

Definition at line 446 of file itkObject.cxx.

Referenced by otb::Wrapper::Application::AddProcess(), itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::IterateThreaderCallback(), and itk::VTKImageExportBase::UpdateDataCallback().

void itk::Object::InvokeEvent ( const EventObject &  event ) const

inherited

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

Definition at line 457 of file itkObject.cxx.

void itk::Object::Modified ( void  ) const

virtualinherited

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Make sure this object's modified time is greater than all others.

Reimplemented in otb::SVMModel< TValue, TLabel >, otb::SurfaceAdjacencyEffect6SCorrectionSchemeFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, otb::Accessor::VectorImageToASPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ShiftScalePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, otb::GenericRSTransform< TScalarType, NInputDimensions, NOutputDimensions >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, TBufferConverter >, otb::MeanShiftImageFilter< TInputImage, TOutputImage, TLabeledOutput, MeanShift::VectorBufferConverter >, otb::GCPsToRPCSensorModelImageFilter< TImage >, otb::Polygon< TValue >, otb::ImageRegionAdaptativeSplitter< VImageDimension >, otb::GenericInterpolateImageFunction< TInputImage, TFunction, TBoundaryCondition, TCoordRep >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, VDimension >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, otb::PolyLineParametricPathWithValue< TValue, 2 >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, otb::PhysicalToRPCSensorModelImageFilter< TImage >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, TFilter >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, RankImageFilter< TInputImage, TInputImage, FlatStructuringElement< ::itk::GetImageDimension< TInputImage >::ImageDimension > > >, itk::NormalizeImageFilter< TInputImage, TOutputImage >, and otb::StatisticsXMLFileReader< TMeasurementVector >.

Definition at line 297 of file itkObject.cxx.

Referenced by otb::Wrapper::InputImageListParameter::AddFromFileName(), otb::Wrapper::InputVectorDataListParameter::AddFromFileName(), otb::Wrapper::InputFilenameListParameter::AddFromFileName(), otb::Wrapper::InputImageListParameter::AddImage(), otb::Wrapper::InputVectorDataListParameter::AddNullElement(), otb::Wrapper::InputImageListParameter::AddNullElement(), otb::Wrapper::InputFilenameListParameter::AddNullElement(), otb::Wrapper::StringListParameter::AddNullElement(), otb::VectorDataModel::AddPointToGeometry(), otb::Wrapper::InputVectorDataListParameter::AddVectorData(), otb::Wrapper::InputFilenameListParameter::ClearValue(), otb::Wrapper::InputVectorDataListParameter::ClearValue(), otb::Wrapper::InputImageListParameter::ClearValue(), otb::VectorDataModel::DeleteGeometry(), otb::VectorDataModel::EndGeometry(), otb::Wrapper::InputFilenameListParameter::Erase(), otb::Wrapper::InputVectorDataListParameter::Erase(), otb::Wrapper::InputImageListParameter::Erase(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), otb::ImageWidget< TInputImage >::LinearInterpolationOff(), otb::ImageWidget< TInputImage >::LinearInterpolationOn(), itk::MatrixOffsetTransformBase< TScalarType, NInputDimensions, NOutputDimensions >::MatrixOffsetTransformBase(), otb::ogr::ImageReference< double >::Modified(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetAutoMinMax(), otb::BlendingImageFilter< TInputImage1, TInputImage2, TOutputImage >::SetBlendingFunction(), otb::ImageLayerGenerator< TImageLayer >::SetBlendingFunction(), otb::TileMapImageIO::SetCacheDirectory(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetChannelList(), itk::LBFGSBOptimizer::SetCostFunction(), itk::MINC2ImageIO::SetDimensionName(), SetDimensions(), otb::ImageIOBase::SetDimensions(), SetDirection(), otb::ImageIOBase::SetDirection(), otb::Wrapper::InputImageListParameter::SetImageList(), itk::GDCMSeriesFileNames::SetInputDirectory(), otb::HistogramStatisticsFunction< TInputHistogram, TOutput >::SetInputHistogram(), otb::ImageToGenericRSOutputParameters< TImage >::SetInputKeywordList(), otb::Wrapper::InputImageListParameter::SetListFromFileName(), otb::Wrapper::InputVectorDataListParameter::SetListFromFileName(), otb::Wrapper::InputFilenameListParameter::SetListFromFileName(), otb::Function::RenderingFunction< TPixel, TRGBPixel >::SetListSample(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), otb::Wrapper::InputVectorDataListParameter::SetNthFileName(), otb::Wrapper::InputImageListParameter::SetNthFileName(), otb::Wrapper::InputFilenameListParameter::SetNthFileName(), otb::ImageIOBase::SetNumberOfDimensions(), SetNumberOfDimensions(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), SetOrigin(), otb::ImageIOBase::SetOrigin(), otb::ImageToGenericRSOutputParameters< TImage >::SetOutputProjectionRef(), otb::MapProjectionAdapter::SetParameter(), otb::Function::GaussianRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetParameters(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::SetParameters(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), otb::ImageLayerGenerator< TImageLayer >::SetRenderingFunction(), otb::RenderingImageFilter< TInputImage, TOutputImage >::SetRenderingFunction(), SetSpacing(), otb::ImageIOBase::SetSpacing(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation(), otb::Wrapper::InputFilenameParameter::SetValue(), otb::Wrapper::OutputFilenameParameter::SetValue(), otb::Wrapper::ListViewParameter::SetValue(), otb::Wrapper::ChoiceParameter::SetValue(), otb::Wrapper::InputVectorDataListParameter::SetVectorDataList(), and otb::MapProjectionAdapter::SetWkt().

static Pointer itk::LightProcessObject::New ( )

staticinherited

Method for creation through the object factory.

void itk::ImageIOBase::operator= ( const Self &  )

private

void itk::LightObject::Print ( std::ostream &  os, Indent  indent = 0  ) const

inherited

Cause the object to print itself out.

Avoid DLL boundary problems. This function will be common to all itk objects. It just calls the header/self/trailer virtual print methods, which can be overriden by subclasses (any itk object).

Definition at line 135 of file itkLightObject.cxx.

References itk::Indent::GetNextIndent().

Referenced by itk::operator<<().

void itk::LightObject::PrintHeader ( std::ostream &  os, Indent  indent  ) const

protectedvirtualinherited

Define a default print header for all objects.

Definition at line 320 of file itkLightObject.cxx.

bool itk::Object::PrintObservers ( std::ostream &  os, Indent  indent  ) const

protectedinherited

Definition at line 478 of file itkObject.cxx.

void itk::ImageIOBase::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Chaining method to print an object's instance variables, as well as its superclasses.

Reimplemented from itk::LightProcessObject.

Reimplemented in itk::Bruker2DSEQImageIO, itk::MetaImageIO, itk::PhilipsRECImageIO, itk::RawImageIO< TPixel, VImageDimension >, itk::IPLCommonImageIO, itk::TIFFImageIO, itk::NiftiImageIO, itk::StimulateImageIO, itk::MRCImageIO, itk::MINC2ImageIO, itk::VoxBoCUBImageIO, itk::JPEGImageIO, itk::VTKImageIO2, itk::PNGImageIO, itk::StreamingImageIOBase, itk::NrrdImageIO, itk::VTKImageIO, and itk::LSMImageIO.

Definition at line 1292 of file itkImageIOBase.cxx.

References GetByteOrderAsString(), GetComponentTypeAsString(), GetFileTypeAsString(), itk::Indent::GetNextIndent(), GetPixelTypeAsString(), m_ByteOrder, m_ComponentType, m_Dimensions, m_FileName, m_FileType, m_IORegion, m_NumberOfComponents, m_NumberOfDimensions, m_Origin, m_PixelType, m_UseCompression, m_UseStreamedReading, m_UseStreamedWriting, itk::Region::Print(), and itk::LightProcessObject::PrintSelf().

Referenced by itk::LSMImageIO::PrintSelf(), itk::BMPImageIO::PrintSelf(), itk::GiplImageIO::PrintSelf(), itk::VTKImageIO::PrintSelf(), itk::BioRadImageIO::PrintSelf(), itk::NrrdImageIO::PrintSelf(), itk::StreamingImageIOBase::PrintSelf(), itk::PNGImageIO::PrintSelf(), itk::JPEGImageIO::PrintSelf(), itk::VoxBoCUBImageIO::PrintSelf(), itk::DICOMImageIO2::PrintSelf(), itk::MINC2ImageIO::PrintSelf(), itk::StimulateImageIO::PrintSelf(), itk::Brains2MaskImageIO::PrintSelf(), itk::TIFFImageIO::PrintSelf(), itk::IPLCommonImageIO::PrintSelf(), itk::PhilipsRECImageIO::PrintSelf(), itk::AnalyzeImageIO::PrintSelf(), itk::MetaImageIO::PrintSelf(), itk::Bruker2DSEQImageIO::PrintSelf(), and itk::GDCMImageIO::PrintSelf().

void itk::LightObject::PrintTrailer ( std::ostream &  os, Indent  indent  ) const

protectedvirtualinherited

Define a default print trailer for all objects.

Definition at line 331 of file itkLightObject.cxx.

virtual void itk::ImageIOBase::Read ( void *  buffer )

pure virtual

Reads the data from disk into the memory buffer provided.

Implemented in itk::Bruker2DSEQImageIO, itk::AnalyzeImageIO, itk::PhilipsRECImageIO, itk::RawImageIO< TPixel, VImageDimension >, itk::IPLCommonImageIO, itk::GDCMImageIO, itk::Brains2MaskImageIO, itk::MINC2ImageIO, itk::MRCImageIO, itk::StimulateImageIO, itk::VoxBoCUBImageIO, itk::NiftiImageIO, itk::MetaImageIO, itk::JPEGImageIO, itk::NrrdImageIO, itk::VTKImageIO2, itk::BioRadImageIO, itk::GiplImageIO, itk::PNGImageIO, itk::VTKImageIO, itk::BMPImageIO, itk::LSMImageIO, itk::TIFFImageIO, and itk::DICOMImageIO2.

void itk::ImageIOBase::ReadBufferAsASCII ( std::istream &  os, void *  buffer, IOComponentType  ctype, ImageIOBase::SizeType  numComp  )

protected

Convenient method to read a buffer as ASCII text.

Definition at line 981 of file itkImageIOBase.cxx.

References CDOUBLE, CFLOAT, CHAR, CINT, CSHORT, DOUBLE, FLOAT, INT, LONG, itk::ReadBuffer(), SHORT, UCHAR, UINT, ULONG, and USHORT.

Referenced by itk::VTKImageIO::Read(), and itk::VTKImageIO2::Read().

bool itk::ImageIOBase::ReadBufferAsBinary ( std::istream &  os, void *  buffer, ImageIOBase::SizeType  num  )

protected

Convenient method to read a buffer as binary. Return true on success.

Definition at line 645 of file itkImageIOBase.cxx.

Referenced by itk::AnalyzeImageIO::CanReadFile(), itk::BioRadImageIO::Read(), itk::StimulateImageIO::Read(), itk::IPLCommonImageIO::Read(), and itk::AnalyzeImageIO::ReadImageInformation().

virtual void itk::ImageIOBase::ReadImageInformation ( )

pure virtual

Read the spacing and dimentions of the image. Assumes SetFileName has been called with a valid file name.

Implemented in itk::Bruker2DSEQImageIO, itk::AnalyzeImageIO, itk::PhilipsRECImageIO, itk::RawImageIO< TPixel, VImageDimension >, itk::GDCMImageIO, itk::Brains2MaskImageIO, itk::IPLCommonImageIO, itk::MINC2ImageIO, itk::MRCImageIO, itk::StimulateImageIO, itk::VoxBoCUBImageIO, itk::NiftiImageIO, itk::MetaImageIO, itk::JPEGImageIO, itk::NrrdImageIO, itk::VTKImageIO2, itk::BioRadImageIO, itk::GiplImageIO, itk::PNGImageIO, itk::VTKImageIO, itk::BMPImageIO, itk::LSMImageIO, itk::TIFFImageIO, and itk::DICOMImageIO2.

void itk::Object::Register ( ) const

virtualinherited

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

Definition at line 309 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::RegisterFactory().

void itk::Object::RemoveAllObservers ( )

inherited

Remove all observers .

Definition at line 435 of file itkObject.cxx.

void itk::Object::RemoveObserver ( unsigned long  tag )

inherited

Remove the observer with this tag value.

Definition at line 425 of file itkObject.cxx.

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), and otb::ImageFileWriter< TInputImage >::Update().

void itk::ImageIOBase::Reset ( const bool  freeDynamic = true )

protectedvirtual

Return the object to an initialized state, ready to be used

Definition at line 46 of file itkImageIOBase.cxx.

References m_Dimensions, m_FileName, m_Initialized, m_NumberOfComponents, m_NumberOfDimensions, m_Strides, m_UseCompression, m_UseStreamedReading, and m_UseStreamedWriting.

Referenced by ImageIOBase().

void itk::ImageIOBase::Resize ( const unsigned int  numDimensions, const unsigned int *  dimensions  )

protected

Resize the ImageIOBase object to new dimensions.

Definition at line 88 of file itkImageIOBase.cxx.

References ComputeStrides(), m_Dimensions, m_NumberOfDimensions, and NULL.

virtual void itk::LightProcessObject::SetAbortGenerateData ( bool  _arg )

virtualinherited

Set the AbortGenerateData flag for the process object. Process objects may handle premature termination of execution in different ways.

virtual void itk::ImageIOBase::SetByteOrder ( const ByteOrder  _arg )

virtual

These methods indicate the byte ordering of the file you are trying to read in. These methods will then either swap or not swap the bytes depending on the byte ordering of the machine it is being run on. For example, reading in a BigEndian file on a BigEndian machine will result in no swapping. Trying to read the same file on a LittleEndian machine will result in swapping. Note: most UNIX machines are BigEndian while PC's and VAX's are LittleEndian. So if the file you are reading in was generated on a VAX or PC, SetByteOrderToLittleEndian() otherwise SetByteOrderToBigEndian(). Some ImageIOBase subclasses ignore these methods.

Referenced by itk::NrrdImageIO::ReadImageInformation().

void itk::ImageIOBase::SetByteOrderToBigEndian ( )

inline

Definition at line 235 of file itkImageIOBase.h.

Referenced by itk::NrrdImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), and itk::MRCImageIO::ReadImageInformation().

void itk::ImageIOBase::SetByteOrderToLittleEndian ( )

inline

Definition at line 239 of file itkImageIOBase.h.

Referenced by itk::NrrdImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), and itk::MRCImageIO::ReadImageInformation().

virtual void itk::ImageIOBase::SetComponentType ( const IOComponentType  _arg )

virtual

Set/Get the component type of the image. This is always a native type.

Referenced by itk::BioRadImageIO::InternalReadImageInformation(), itk::VTKImageIO::InternalReadImageInformation(), itk::VTKImageIO2::InternalReadImageInformation(), itk::StimulateImageIO::InternalReadImageInformation(), itk::GDCMImageIO::InternalReadImageInformation(), itk::itkSetPixelType(), itk::DICOMImageIO2::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::MRCImageIO::ReadImageInformation(), itk::MINC2ImageIO::ReadImageInformation(), itk::VTKImageIO2::SetPixelTypeFromString(), and SetPixelTypeInfo().

void itk::Object::SetDebug ( bool  debugFlag ) const

inherited

Set the value of the debug flag. A non-zero value turns debugging on.

Definition at line 275 of file itkObject.cxx.

void itk::ImageIOBase::SetDimensions ( unsigned int  i, unsigned int  dim  )

virtual

Set/Get the image dimensions in the x, y, z, etc. directions. GetDimensions() is typically used after reading the data; the SetDimensions() is used prior to writing the data.

Definition at line 102 of file itkImageIOBase.cxx.

References m_Dimensions, and itk::Object::Modified().

Referenced by itk::VTKImageIO2::InternalReadImageInformation(), itk::DICOMImageIO2::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::MINC2ImageIO::ReadImageInformation(), itk::IPLCommonImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), and itk::Bruker2DSEQImageIO::ReadImageInformation().

void itk::ImageIOBase::SetDirection ( unsigned int  i, std::vector< double > &  direction  )

virtual

Set/Get the image direction on an axis-by-axis basis. The SetDirection() method is required when writing the image.

Definition at line 147 of file itkImageIOBase.cxx.

References m_Direction, and itk::Object::Modified().

Referenced by itk::Brains2MaskImageIO::CanReadFile(), itk::GDCMImageIO::InternalReadImageInformation(), itk::GE5ImageIO::ModifyImageInformation(), itk::NrrdImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::MINC2ImageIO::ReadImageInformation(), itk::IPLCommonImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), itk::NiftiImageIO::SetImageIOOrientationFromNIfTI(), and SetNumberOfDimensions().

void itk::ImageIOBase::SetDirection ( unsigned int  i, vnl_vector< double > &  direction  )

virtual

Definition at line 162 of file itkImageIOBase.cxx.

References m_Direction, and itk::Object::Modified().

virtual void itk::ImageIOBase::SetFileName ( const char *  _arg )

virtual

Set/Get the name of the file to be read.

Referenced by itk::SiemensVisionImageIO::CanReadFile().

virtual void itk::ImageIOBase::SetFileType ( const FileType  _arg )

virtual

These methods control whether the file is written binary or ASCII. Many file formats (i.e., subclasses) ignore this flag.

Referenced by itk::MetaImageIO::ReadImageInformation().

void itk::ImageIOBase::SetFileTypeToASCII ( )

inline

Definition at line 213 of file itkImageIOBase.h.

Referenced by itk::VTKImageIO::InternalReadImageInformation(), itk::VTKImageIO2::InternalReadImageInformation(), and itk::NrrdImageIO::ReadImageInformation().

void itk::ImageIOBase::SetFileTypeToBinary ( )

inline

Definition at line 217 of file itkImageIOBase.h.

Referenced by itk::VTKImageIO::InternalReadImageInformation(), itk::VTKImageIO2::InternalReadImageInformation(), itk::MRCImageIO::MRCImageIO(), and itk::NrrdImageIO::ReadImageInformation().

void itk::Object::SetGlobalWarningDisplay ( bool  val )

staticinherited

This is a global flag that controls whether any debug, warning or error messages are displayed.

Set the value of the global debug output control flag.

Definition at line 370 of file itkObject.cxx.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

virtual void itk::ImageIOBase::SetIORegion ( ImageIORegion  _arg )

virtual

Specify the region of the image data to either read or write. The IORegion specifies the part of the image to read or write. Regions are defined with an index and a size vector. These vectors define the start (lower-left corner) and length of the region within the image. Make sure that the IORegion lies within the image.

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary &  rhs )

inherited

Returns

Set the MetaDataDictionary

Definition at line 554 of file itkObject.cxx.

References NULL.

Referenced by otb::VectorImage< TPixel, VImageDimension >::CopyInformation(), and otb::Image< TPixel, VImageDimension >::CopyInformation().

virtual void itk::ImageIOBase::SetNumberOfComponents ( unsigned int  _arg )

virtual

Set/Get the number of components per pixel in the image. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

Referenced by itk::Bruker2DSEQImageIO::Bruker2DSEQImageIO(), itk::AnalyzeImageIO::DefineHeaderObjectDataType(), itk::VTKImageIO::InternalReadImageInformation(), itk::VTKImageIO2::InternalReadImageInformation(), itk::GDCMImageIO::InternalReadImageInformation(), itk::itkSetPixelType(), itk::MRCImageIO::MRCImageIO(), itk::RawImageIO< TPixel, VImageDimension >::RawImageIO(), itk::DICOMImageIO2::ReadImageInformation(), itk::TIFFImageIO::ReadImageInformation(), itk::BMPImageIO::ReadImageInformation(), itk::PNGImageIO::ReadImageInformation(), itk::JPEGImageIO::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::MINC2ImageIO::ReadImageInformation(), itk::MRCImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), and SetPixelTypeInfo().

void itk::ImageIOBase::SetNumberOfDimensions

(

unsigned int

dim

)

Set/Get the number of independent variables (dimensions) in the image being read or written. Note this is not necessarily what is written, rather the IORegion controls that.

Definition at line 610 of file itkImageIOBase.cxx.

References m_Dimensions, m_Direction, m_NumberOfDimensions, m_Origin, m_Spacing, m_Strides, itk::Object::Modified(), SetDirection(), SetOrigin(), and SetSpacing().

Referenced by itk::AnalyzeImageIO::AnalyzeImageIO(), itk::BioRadImageIO::BioRadImageIO(), itk::BMPImageIO::BMPImageIO(), itk::Brains2MaskImageIO::Brains2MaskImageIO(), itk::Bruker2DSEQImageIO::Bruker2DSEQImageIO(), itk::Brains2MaskImageIO::CanReadFile(), itk::DICOMImageIO2::DICOMImageIO2(), itk::GDCMImageIO::GDCMImageIO(), itk::VTKImageIO::InternalReadImageInformation(), itk::BioRadImageIO::InternalReadImageInformation(), itk::VTKImageIO2::InternalReadImageInformation(), itk::StimulateImageIO::InternalReadImageInformation(), itk::JPEGImageIO::JPEGImageIO(), itk::MRCImageIO::MRCImageIO(), itk::NiftiImageIO::NiftiImageIO(), itk::PhilipsRECImageIO::PhilipsRECImageIO(), itk::PNGImageIO::PNGImageIO(), itk::RawImageIO< TPixel, VImageDimension >::RawImageIO(), itk::TIFFImageIO::ReadImageInformation(), itk::BMPImageIO::ReadImageInformation(), itk::GiplImageIO::ReadImageInformation(), itk::PNGImageIO::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), itk::JPEGImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), itk::MINC2ImageIO::ReadImageInformation(), itk::IPLCommonImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::StimulateImageIO::StimulateImageIO(), itk::TIFFImageIO::TIFFImageIO(), itk::VTKImageIO::VTKImageIO(), and itk::VTKImageIO2::VTKImageIO2().

void itk::ImageIOBase::SetOrigin ( unsigned int  i, double  origin  )

virtual

Set/Get the image origin on a axis-by-axis basis. The SetOrigin() method is required when writing the image.

Definition at line 117 of file itkImageIOBase.cxx.

References m_Origin, and itk::Object::Modified().

Referenced by itk::Brains2MaskImageIO::CanReadFile(), itk::VTKImageIO2::InternalReadImageInformation(), itk::GE5ImageIO::ModifyImageInformation(), itk::DICOMImageIO2::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::MINC2ImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), and SetNumberOfDimensions().

virtual void itk::ImageIOBase::SetPixelType ( const IOPixelType  _arg )

virtual

Set/Get the type of the pixel. The PixelTypes provides context to the IO mechanisms for data conversions. PixelTypes can be SCALAR, RGB, RGBA, VECTOR, COVARIANTVECTOR, POINT, INDEX. If the PIXELTYPE is SCALAR, then the NumberOfComponents should be 1. Anyother of PIXELTYPE will have more than one component.

Referenced by itk::VTKImageIO::InternalReadImageInformation(), itk::VTKImageIO2::InternalReadImageInformation(), itk::StimulateImageIO::InternalReadImageInformation(), itk::GDCMImageIO::InternalReadImageInformation(), itk::itkSetPixelType(), itk::DICOMImageIO2::ReadImageInformation(), itk::TIFFImageIO::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::MRCImageIO::ReadImageInformation(), itk::MINC2ImageIO::ReadImageInformation(), and SetPixelTypeInfo().

bool itk::ImageIOBase::SetPixelTypeInfo ( const std::type_info &  ptype )

virtual

SetPixelTypeInfo is used by writers to convert from an ITK strongly typed pixel to a ImageIO (weaker) typed pixel. This function sets these PixelType, ComponentType, and NumberOfComponents based on RTTI type_info structure passed in. The function returns false if the pixel type is not supported.

Definition at line 476 of file itkImageIOBase.cxx.

References CDOUBLE, CFLOAT, CHAR, CINT, CSHORT, DOUBLE, FLOAT, GetComponentType(), GetPixelType(), INT, itk::itkSetPixelType(), LONG, OFFSET, SetComponentType(), SetNumberOfComponents(), SetPixelType(), SHORT, UCHAR, UINT, ULONG, UNKNOWNCOMPONENTTYPE, UNKNOWNPIXELTYPE, and USHORT.

Referenced by itk::RawImageIO< TPixel, VImageDimension >::RawImageIO().

virtual void itk::LightProcessObject::SetProgress ( float  _arg )

virtualinherited

Set the execution progress of a process object. The progress is a floating number between (0,1), 0 meaning no progress; 1 meaning the filter has completed execution.

void itk::Object::SetReferenceCount ( int  ref )

virtualinherited

Sets the reference count (use with care)

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 347 of file itkObject.cxx.

void itk::ImageIOBase::SetSpacing ( unsigned int  i, double  spacing  )

virtual

Set/Get the image spacing on an axis-by-axis basis. The SetSpacing() method is required when writing the image.

Definition at line 132 of file itkImageIOBase.cxx.

References m_Spacing, and itk::Object::Modified().

Referenced by itk::VTKImageIO2::InternalReadImageInformation(), itk::GE5ImageIO::ModifyImageInformation(), itk::DICOMImageIO2::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::MINC2ImageIO::ReadImageInformation(), itk::IPLCommonImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), and SetNumberOfDimensions().

virtual void itk::ImageIOBase::SetUseCompression ( bool  _arg )

virtual

Set/Get a boolean to use the compression or not.

virtual void itk::ImageIOBase::SetUseStreamedReading ( bool  _arg )

virtual

Set/Get a boolean to use streaming while reading or not.

virtual void itk::ImageIOBase::SetUseStreamedWriting ( bool  _arg )

virtual

Set/Get a boolean to use streaming while writing or not.

virtual bool itk::ImageIOBase::SupportsDimension ( unsigned long  dim )

inlinevirtual

The different types of ImageIO's can support data of varying dimensionality. For example, some file formats are strictly 2D while others can support 2D, 3D, or even n-D. This method returns true/false as to whether the ImageIO can support the dimension indicated.

Reimplemented in itk::RawImageIO< TPixel, VImageDimension >, itk::MetaImageIO, and itk::NrrdImageIO.

Definition at line 337 of file itkImageIOBase.h.

void itk::Object::UnRegister ( ) const

virtualinherited

Decrease the reference count (release by another object).

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 324 of file itkObject.cxx.

Referenced by itk::Object::New(), and itk::ObjectFactoryBase::UnRegisterFactory().

void itk::LightProcessObject::UpdateOutputData ( void  )

virtualinherited

Actually generate new output.

GenerateData this object - we have not aborted yet, and our progress before we start to execute is 0.0.

If we ended due to aborting, push the progress up to 1.0 (since it probably didn't end there)

Definition at line 77 of file itkLightProcessObject.cxx.

void itk::LightProcessObject::UpdateProgress ( float  amount )

inherited

Update the progress of the process object. If a ProgressMethod exists, executes it. Then set the Progress ivar to amount. The parameter amount should range between (0,1).

Definition at line 51 of file itkLightProcessObject.cxx.

virtual void itk::ImageIOBase::UseCompressionOff ( )

virtual

virtual void itk::ImageIOBase::UseCompressionOn ( )

virtual

virtual void itk::ImageIOBase::UseStreamedReadingOff ( )

virtual

virtual void itk::ImageIOBase::UseStreamedReadingOn ( )

virtual

virtual void itk::ImageIOBase::UseStreamedWritingOff ( )

virtual

virtual void itk::ImageIOBase::UseStreamedWritingOn ( )

virtual

virtual void itk::ImageIOBase::Write ( const void *  buffer )

pure virtual

Writes the data to disk from the memory buffer provided. Make sure that the IORegions has been set properly. The buffer is cast to a pointer to the beginning of the image data.

Implemented in itk::Bruker2DSEQImageIO, itk::PhilipsRECImageIO, itk::AnalyzeImageIO, itk::RawImageIO< TPixel, VImageDimension >, itk::IPLCommonImageIO, itk::GDCMImageIO, itk::Brains2MaskImageIO, itk::MINC2ImageIO, itk::MRCImageIO, itk::StimulateImageIO, itk::NiftiImageIO, itk::VoxBoCUBImageIO, itk::MetaImageIO, itk::JPEGImageIO, itk::PNGImageIO, itk::TIFFImageIO, itk::VTKImageIO2, itk::BioRadImageIO, itk::NrrdImageIO, itk::VTKImageIO, itk::DICOMImageIO2, itk::GiplImageIO, itk::BMPImageIO, and itk::LSMImageIO.

void itk::ImageIOBase::WriteBufferAsASCII ( std::ostream &  os, const void *  buffer, IOComponentType  ctype, ImageIOBase::SizeType  numComp  )

protected

Convenient method to write a buffer as ASCII text.

Definition at line 843 of file itkImageIOBase.cxx.

References CDOUBLE, CFLOAT, CHAR, CINT, CSHORT, DOUBLE, FLOAT, INT, LONG, SHORT, UCHAR, UINT, ULONG, and USHORT.

Referenced by itk::VTKImageIO::Write(), and itk::VTKImageIO2::Write().

virtual void itk::ImageIOBase::WriteImageInformation ( )

pure virtual

Writes the spacing and dimentions of the image. Assumes SetFileName has been called with a valid file name.

Implemented in itk::Bruker2DSEQImageIO, itk::AnalyzeImageIO, itk::PhilipsRECImageIO, itk::RawImageIO< TPixel, VImageDimension >, itk::IPLCommonImageIO, itk::GDCMImageIO, itk::Brains2MaskImageIO, itk::MINC2ImageIO, itk::StimulateImageIO, itk::NiftiImageIO, itk::VoxBoCUBImageIO, itk::MetaImageIO, itk::JPEGImageIO, itk::PNGImageIO, itk::TIFFImageIO, itk::VTKImageIO2, itk::BioRadImageIO, itk::NrrdImageIO, itk::VTKImageIO, itk::DICOMImageIO2, itk::GiplImageIO, itk::BMPImageIO, itk::LSMImageIO, and itk::MRCImageIO.

Member Data Documentation

ByteOrder itk::ImageIOBase::m_ByteOrder

protected

Big or Little Endian, and the type of the file. (May be ignored.)

Definition at line 416 of file itkImageIOBase.h.

Referenced by itk::AnalyzeImageIO::AnalyzeImageIO(), itk::BioRadImageIO::BioRadImageIO(), itk::BMPImageIO::BMPImageIO(), itk::Bruker2DSEQImageIO::Bruker2DSEQImageIO(), itk::GiplImageIO::CanReadFile(), itk::Brains2MaskImageIO::CanReadFile(), itk::AnalyzeImageIO::CanReadFile(), itk::DICOMImageIO2::DICOMImageIO2(), itk::GDCMImageIO::GDCMImageIO(), itk::GiplImageIO::GiplImageIO(), itk::LSMImageIO::LSMImageIO(), itk::MetaImageIO::MetaImageIO(), itk::PhilipsRECImageIO::PhilipsRECImageIO(), PrintSelf(), itk::RawImageIO< TPixel, VImageDimension >::RawImageIO(), itk::GiplImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), itk::StimulateImageIO::StimulateImageIO(), itk::PhilipsRECImageIO::SwapBytesIfNecessary(), itk::AnalyzeImageIO::SwapBytesIfNecessary(), itk::Bruker2DSEQImageIO::SwapBytesIfNecessary(), itk::AnalyzeImageIO::SwapHeaderBytesIfNecessary(), itk::VoxBoCUBImageIO::VoxBoCUBImageIO(), itk::VTKImageIO::VTKImageIO(), and itk::VTKImageIO2::VTKImageIO2().

IOComponentType itk::ImageIOBase::m_ComponentType

protected

Used internally to keep track of the type of the component. It is set when ComputeStrides() is invoked.

Definition at line 413 of file itkImageIOBase.h.

Referenced by itk::AnalyzeImageIO::AnalyzeImageIO(), itk::BioRadImageIO::BioRadImageIO(), itk::BMPImageIO::BMPImageIO(), itk::Brains2MaskImageIO::Brains2MaskImageIO(), itk::Bruker2DSEQImageIO::Bruker2DSEQImageIO(), itk::Brains2MaskImageIO::CanReadFile(), itk::AnalyzeImageIO::DefineHeaderObjectDataType(), itk::DICOMImageIO2::DICOMImageIO2(), itk::TIFFImageIO::EvaluateImageAt(), GetComponentSize(), GetComponentTypeInfo(), GetPixelSize(), itk::GDCMImageIO::InternalReadImageInformation(), itk::JPEGImageIO::JPEGImageIO(), itk::PhilipsRECImageIO::PhilipsRECImageIO(), itk::PNGImageIO::PNGImageIO(), PrintSelf(), itk::NrrdImageIO::Read(), itk::NiftiImageIO::Read(), itk::GDCMImageIO::Read(), itk::TIFFImageIO::ReadGenericImage(), itk::TIFFImageIO::ReadImageInformation(), itk::GiplImageIO::ReadImageInformation(), itk::PNGImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), itk::TIFFImageIO::ReadTwoSamplesPerPixelImage(), itk::TIFFImageIO::ReadVolume(), itk::PhilipsRECImageIO::SwapBytesIfNecessary(), itk::AnalyzeImageIO::SwapBytesIfNecessary(), itk::Bruker2DSEQImageIO::SwapBytesIfNecessary(), itk::TIFFImageIO::TIFFImageIO(), itk::NrrdImageIO::Write(), itk::VTKImageIO::Write(), itk::GDCMImageIO::Write(), and itk::VTKImageIO2::WriteImageInformation().

std::vector< SizeValueType > itk::ImageIOBase::m_Dimensions

protected

The array which stores the number of pixels in the x, y, z directions.

Definition at line 446 of file itkImageIOBase.h.

Referenced by itk::Brains2MaskImageIO::CanReadFile(), ComputeStrides(), itk::LSMImageIO::FillZeissStruct(), itk::StreamingImageIOBase::GenerateStreamableReadRegionFromRequestedRegion(), itk::BioRadImageIO::InternalReadImageInformation(), itk::VTKImageIO::InternalReadImageInformation(), itk::StimulateImageIO::InternalReadImageInformation(), itk::GDCMImageIO::InternalReadImageInformation(), itk::TIFFImageIO::InternalWrite(), PrintSelf(), itk::BMPImageIO::Read(), itk::GiplImageIO::Read(), itk::PhilipsRECImageIO::Read(), itk::Bruker2DSEQImageIO::Read(), itk::TIFFImageIO::ReadImageInformation(), itk::BMPImageIO::ReadImageInformation(), itk::GiplImageIO::ReadImageInformation(), itk::PNGImageIO::ReadImageInformation(), itk::JPEGImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), itk::MRCImageIO::ReadImageInformation(), Reset(), Resize(), SetDimensions(), SetNumberOfDimensions(), itk::MRCImageIO::UpdateHeaderFromImageIO(), itk::LSMImageIO::Write(), itk::BioRadImageIO::Write(), itk::StimulateImageIO::Write(), itk::GDCMImageIO::Write(), and itk::JPEGImageIO::WriteSlice().

std::vector<std::vector<double> > itk::ImageIOBase::m_Direction

protected

The arrays which store the direction cosines of the image.

Definition at line 456 of file itkImageIOBase.h.

Referenced by itk::GDCMImageIO::InternalReadImageInformation(), SetDirection(), SetNumberOfDimensions(), itk::MINC2ImageIO::Write(), and itk::GDCMImageIO::Write().

std::string itk::ImageIOBase::m_FileName

protected

Filename to read

Definition at line 423 of file itkImageIOBase.h.

Referenced by itk::Brains2MaskImageIO::CanWriteFile(), itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::BioRadImageIO::InternalReadImageInformation(), itk::VTKImageIO::InternalReadImageInformation(), itk::VTKImageIO2::InternalReadImageInformation(), itk::StimulateImageIO::InternalReadImageInformation(), itk::MRCImageIO::InternalReadImageInformation(), itk::GDCMImageIO::InternalReadImageInformation(), itk::TIFFImageIO::InternalWrite(), itk::StreamingImageIOBase::OpenFileForWriting(), PrintSelf(), itk::DICOMImageIO2::Read(), itk::BMPImageIO::Read(), itk::BioRadImageIO::Read(), itk::VTKImageIO2::Read(), itk::MetaImageIO::Read(), itk::StimulateImageIO::Read(), itk::MINC2ImageIO::Read(), itk::GDCMImageIO::Read(), itk::PhilipsRECImageIO::Read(), itk::AnalyzeImageIO::Read(), itk::Bruker2DSEQImageIO::Read(), itk::StreamingImageIOBase::ReadBufferAsBinary(), itk::VTKImageIO2::ReadHeaderSize(), itk::DICOMImageIO2::ReadImageInformation(), itk::TIFFImageIO::ReadImageInformation(), itk::BMPImageIO::ReadImageInformation(), itk::GiplImageIO::ReadImageInformation(), itk::PNGImageIO::ReadImageInformation(), itk::JPEGImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), itk::MINC2ImageIO::ReadImageInformation(), itk::Brains2MaskImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), Reset(), itk::StreamingImageIOBase::StreamWriteBufferAsBinary(), itk::LSMImageIO::Write(), itk::VTKImageIO::Write(), itk::BioRadImageIO::Write(), itk::VTKImageIO2::Write(), itk::PNGImageIO::Write(), itk::JPEGImageIO::Write(), itk::StimulateImageIO::Write(), itk::MINC2ImageIO::Write(), itk::GDCMImageIO::Write(), itk::StreamingImageIOBase::WriteBufferAsBinary(), itk::VTKImageIO2::WriteImageInformation(), itk::MRCImageIO::WriteImageInformation(), and itk::MINC2ImageIO::XYZFromDirectionCosines().

FileType itk::ImageIOBase::m_FileType

protected

Definition at line 417 of file itkImageIOBase.h.

Referenced by itk::BioRadImageIO::BioRadImageIO(), itk::GDCMImageIO::GDCMImageIO(), itk::LSMImageIO::LSMImageIO(), itk::MetaImageIO::MetaImageIO(), PrintSelf(), itk::RawImageIO< TPixel, VImageDimension >::RawImageIO(), itk::VTKImageIO::Read(), itk::VTKImageIO2::Read(), itk::StimulateImageIO::StimulateImageIO(), itk::VTKImageIO::VTKImageIO(), itk::VTKImageIO2::VTKImageIO2(), itk::VTKImageIO::Write(), and itk::VTKImageIO2::Write().

bool itk::ImageIOBase::m_Initialized

protected

Does the ImageIOBase object have enough info to be of use?

Definition at line 420 of file itkImageIOBase.h.

Referenced by Reset().

ImageIORegion itk::ImageIOBase::m_IORegion

protected

The region to read or write. The region contains information about the data within the region to read or write.

Definition at line 443 of file itkImageIOBase.h.

Referenced by PrintSelf(), itk::MetaImageIO::Read(), and itk::StreamingImageIOBase::StreamWriteBufferAsBinary().

unsigned int itk::ImageIOBase::m_NumberOfComponents

protected

Stores the number of components per pixel. This will be 1 for grayscale images, 3 for RGBPixel images, and 4 for RGBPixelA images.

Definition at line 427 of file itkImageIOBase.h.

Referenced by itk::BioRadImageIO::BioRadImageIO(), ComputeStrides(), itk::LSMImageIO::FillZeissStruct(), PrintSelf(), itk::GDCMImageIO::Read(), itk::MetaImageIO::ReadImageInformation(), Reset(), and itk::GDCMImageIO::Write().

unsigned int itk::ImageIOBase::m_NumberOfDimensions

protected

The number of independent dimensions in the image.

Definition at line 430 of file itkImageIOBase.h.

Referenced by ComputeStrides(), itk::LSMImageIO::FillZeissStruct(), itk::StreamingImageIOBase::GenerateStreamableReadRegionFromRequestedRegion(), itk::VTKImageIO::InternalReadImageInformation(), itk::BioRadImageIO::InternalReadImageInformation(), itk::VTKImageIO2::InternalReadImageInformation(), itk::StimulateImageIO::InternalReadImageInformation(), itk::TIFFImageIO::InternalWrite(), itk::DICOMImageIO2::PrintSelf(), PrintSelf(), itk::LSMImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), Reset(), Resize(), SetNumberOfDimensions(), itk::LSMImageIO::Write(), itk::BioRadImageIO::Write(), itk::TIFFImageIO::Write(), itk::StimulateImageIO::Write(), itk::GDCMImageIO::Write(), and itk::PNGImageIO::WriteSlice().

std::vector<double> itk::ImageIOBase::m_Origin

protected

The array which stores the origin of the image.

Definition at line 453 of file itkImageIOBase.h.

Referenced by itk::BMPImageIO::BMPImageIO(), itk::VTKImageIO::InternalReadImageInformation(), itk::StimulateImageIO::InternalReadImageInformation(), itk::GDCMImageIO::InternalReadImageInformation(), itk::JPEGImageIO::JPEGImageIO(), itk::PNGImageIO::PNGImageIO(), itk::DICOMImageIO2::PrintSelf(), PrintSelf(), itk::RawImageIO< TPixel, VImageDimension >::RawImageIO(), itk::TIFFImageIO::ReadImageInformation(), itk::GiplImageIO::ReadImageInformation(), itk::PNGImageIO::ReadImageInformation(), itk::JPEGImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), itk::MRCImageIO::ReadImageInformation(), itk::NiftiImageIO::SetImageIOOrientationFromNIfTI(), SetNumberOfDimensions(), SetOrigin(), itk::TIFFImageIO::TIFFImageIO(), itk::MRCImageIO::UpdateHeaderFromImageIO(), itk::VTKImageIO::Write(), itk::StimulateImageIO::Write(), and itk::GDCMImageIO::Write().

IOPixelType itk::ImageIOBase::m_PixelType

protected

Used internally to keep track of the type of the pixel.

Definition at line 409 of file itkImageIOBase.h.

Referenced by itk::AnalyzeImageIO::AnalyzeImageIO(), itk::BioRadImageIO::BioRadImageIO(), itk::BMPImageIO::BMPImageIO(), itk::Brains2MaskImageIO::Brains2MaskImageIO(), itk::Bruker2DSEQImageIO::Bruker2DSEQImageIO(), itk::DICOMImageIO2::DICOMImageIO2(), GetPixelSize(), itk::JPEGImageIO::JPEGImageIO(), itk::PhilipsRECImageIO::PhilipsRECImageIO(), itk::PNGImageIO::PNGImageIO(), itk::GiplImageIO::PrintSelf(), itk::VoxBoCUBImageIO::PrintSelf(), PrintSelf(), itk::NrrdImageIO::Read(), itk::BMPImageIO::ReadImageInformation(), itk::PNGImageIO::ReadImageInformation(), itk::GiplImageIO::ReadImageInformation(), itk::JPEGImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), and itk::TIFFImageIO::TIFFImageIO().

InternalReferenceCountType itk::LightObject::m_ReferenceCount

mutableprotectedinherited

Number of uses of this object by other objects.

Definition at line 141 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock

mutableprotectedinherited

Mutex lock to protect modification to the reference count

Definition at line 144 of file itkLightObject.h.

std::vector<double> itk::ImageIOBase::m_Spacing

protected

The array which stores the spacing of pixels in the x, y, z directions.

Definition at line 450 of file itkImageIOBase.h.

Referenced by itk::BMPImageIO::BMPImageIO(), itk::Brains2MaskImageIO::CanReadFile(), itk::LSMImageIO::FillZeissStruct(), itk::VTKImageIO::InternalReadImageInformation(), itk::BioRadImageIO::InternalReadImageInformation(), itk::StimulateImageIO::InternalReadImageInformation(), itk::GDCMImageIO::InternalReadImageInformation(), itk::JPEGImageIO::JPEGImageIO(), itk::PNGImageIO::PNGImageIO(), itk::DICOMImageIO2::PrintSelf(), itk::RawImageIO< TPixel, VImageDimension >::RawImageIO(), itk::TIFFImageIO::ReadImageInformation(), itk::LSMImageIO::ReadImageInformation(), itk::GiplImageIO::ReadImageInformation(), itk::PNGImageIO::ReadImageInformation(), itk::JPEGImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), itk::MRCImageIO::ReadImageInformation(), SetNumberOfDimensions(), SetSpacing(), itk::TIFFImageIO::TIFFImageIO(), itk::MRCImageIO::UpdateHeaderFromImageIO(), itk::BioRadImageIO::Write(), itk::VTKImageIO::Write(), itk::StimulateImageIO::Write(), itk::GDCMImageIO::Write(), and itk::PNGImageIO::WriteSlice().

std::vector< SizeType > itk::ImageIOBase::m_Strides

protected

Stores the number of bytes it takes to get to the next 'thing' e.g. component, pixel, row, slice, etc.

Definition at line 460 of file itkImageIOBase.h.

Referenced by ComputeStrides(), Reset(), SetNumberOfDimensions(), and itk::MINC2ImageIO::Write().

ArrayOfExtensionsType itk::ImageIOBase::m_SupportedReadExtensions

private

Definition at line 528 of file itkImageIOBase.h.

Referenced by AddSupportedReadExtension(), and GetSupportedReadExtensions().

ArrayOfExtensionsType itk::ImageIOBase::m_SupportedWriteExtensions

private

Definition at line 529 of file itkImageIOBase.h.

Referenced by AddSupportedWriteExtension(), and GetSupportedWriteExtensions().

bool itk::ImageIOBase::m_UseCompression

protected

Should we compress the data?

Definition at line 433 of file itkImageIOBase.h.

Referenced by itk::TIFFImageIO::InternalWrite(), itk::JPEGImageIO::JPEGImageIO(), itk::PNGImageIO::PNGImageIO(), PrintSelf(), Reset(), itk::LSMImageIO::Write(), itk::GDCMImageIO::Write(), and itk::PNGImageIO::WriteSlice().

bool itk::ImageIOBase::m_UseStreamedReading

protected

Should we use streaming for reading

Definition at line 436 of file itkImageIOBase.h.

Referenced by itk::StreamingImageIOBase::GenerateStreamableReadRegionFromRequestedRegion(), PrintSelf(), and Reset().

bool itk::ImageIOBase::m_UseStreamedWriting

protected

Should we use streaming for writing

Definition at line 439 of file itkImageIOBase.h.

Referenced by PrintSelf(), and Reset().

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The documentation for this class was generated from the following files:

• itkImageIOBase.h
• itkImageIOBase.cxx