ImageIO class for reading and writing DICOM V3.0 and ACR/NEMA 1&2 uncompressed images This class is only an adaptor to the gdcm library (currently gdcm 1.2.x is used by default): More...

#include <itkGDCMImageIO.h>

Inheritance diagram for itk::GDCMImageIO:

Collaboration diagram for itk::GDCMImageIO:

Public Types
typedef std::vector< std::string >	ArrayOfExtensionsType

typedef vcl_size_t	BufferSizeType

enum	ByteOrder { BigEndian, LittleEndian, OrderNotApplicable }

typedef SmartPointer< const Self >	ConstPointer

enum	FileType { ASCII, Binary, TypeNotApplicable }

typedef long	IndexValueType

enum	IOComponentType { UNKNOWNCOMPONENTTYPE, UCHAR, CHAR, USHORT, SHORT, UINT, INT, ULONG, LONG, FLOAT, DOUBLE, CSHORT, CINT, CFLOAT, CDOUBLE }

enum	IOPixelType { UNKNOWNPIXELTYPE, SCALAR, RGB, RGBA, OFFSET, VECTOR, POINT, COVARIANTVECTOR, SYMMETRICSECONDRANKTENSOR, DIFFUSIONTENSOR3D, COMPLEX, FIXEDARRAY, MATRIX }

typedef SmartPointer< Self >	Pointer

typedef GDCMImageIO	Self

typedef std::streamoff	SizeType

typedef unsigned long	SizeValueType

typedef ImageIOBase	Superclass

enum	TCompressionType { JPEG = 0, JPEG2000 }

Public Member Functions
virtual void	AbortGenerateDataOff ()

virtual void	AbortGenerateDataOn ()

unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual bool	CanReadFile (const char *)

virtual bool	CanStreamRead ()

virtual bool	CanStreamWrite ()

virtual bool	CanWriteFile (const char *)

virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual void	DebugOff () const

virtual void	DebugOn () const

virtual void	Delete ()

virtual ImageIORegion	GenerateStreamableReadRegionFromRequestedRegion (const ImageIORegion &requested) const

virtual const bool &	GetAbortGenerateData ()

virtual unsigned int	GetActualNumberOfSplitsForWriting (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion)

void	GetBodyPart (char *part)

virtual ByteOrder	GetByteOrder () const

std::string	GetByteOrderAsString (ByteOrder) const

Command *	GetCommand (unsigned long tag)

virtual unsigned int	GetComponentSize () const

virtual IOComponentType	GetComponentType () const

std::string	GetComponentTypeAsString (IOComponentType) const

virtual const std::type_info &	GetComponentTypeInfo () const

virtual TCompressionType	GetCompressionType () const

bool	GetDebug () const

virtual std::vector< double >	GetDefaultDirection (unsigned int i) const

virtual unsigned int	GetDimensions (unsigned int i) const

virtual std::vector< double >	GetDirection (unsigned int i) const

virtual const char *	GetFileName () const

virtual FileType	GetFileType () const

std::string	GetFileTypeAsString (FileType) const

virtual const char *	GetFrameOfReferenceInstanceUID () const

SizeType	GetImageSizeInBytes () const

SizeType	GetImageSizeInComponents () const

SizeType	GetImageSizeInPixels () const

void	GetInstitution (char *ins)

virtual IOComponentType	GetInternalComponentType () const

virtual const ImageIORegion &	GetIORegion ()

virtual bool	GetKeepOriginalUID () const

virtual bool	GetLoadPrivateTags () const

virtual bool	GetLoadSequences () const

void	GetManufacturer (char *manu)

MetaDataDictionary &	GetMetaDataDictionary (void)

const MetaDataDictionary &	GetMetaDataDictionary (void) const

void	GetModality (char *modality)

void	GetModel (char *model)

virtual unsigned long	GetMTime () const

virtual const char *	GetNameOfClass () const

virtual const unsigned int &	GetNumberOfComponents ()

virtual unsigned int	GetNumberOfDimensions () const

void	GetNumberOfSeriesInStudy (char *series)

void	GetNumberOfStudyRelatedSeries (char *series)

virtual double	GetOrigin (unsigned int i) const

void	GetPatientAge (char *age)

void	GetPatientDOB (char *dob)

void	GetPatientID (char *id)

void	GetPatientName (char *name)

void	GetPatientSex (char *sex)

virtual SizeType	GetPixelStride () const

virtual IOPixelType	GetPixelType () const

std::string	GetPixelTypeAsString (IOPixelType) const

virtual const float &	GetProgress ()

virtual int	GetReferenceCount () const

virtual double	GetRescaleIntercept () const

virtual double	GetRescaleSlope () const

void	GetScanOptions (char *options)

virtual const char *	GetSeriesInstanceUID () const

virtual double	GetSpacing (unsigned int i) const

virtual ImageIORegion	GetSplitRegionForWriting (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion, const ImageIORegion &largestPossibleRegion)

void	GetStudyDate (char *date)

void	GetStudyDescription (char *desc)

void	GetStudyID (char *id)

virtual const char *	GetStudyInstanceUID () const

const ArrayOfExtensionsType &	GetSupportedReadExtensions () const

const ArrayOfExtensionsType &	GetSupportedWriteExtensions () const

virtual const char *	GetUIDPrefix () const

virtual bool	GetUseCompression () const

virtual bool	GetUseStreamedReading () const

virtual bool	GetUseStreamedWriting () const

bool	GetValueFromTag (const std::string &tag, std::string &value)

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	KeepOriginalUIDOff ()

virtual void	KeepOriginalUIDOn ()

virtual void	LoadPrivateTagsOff ()

virtual void	LoadPrivateTagsOn ()

virtual void	LoadSequencesOff ()

virtual void	LoadSequencesOn ()

virtual void	Modified () const

void	Print (std::ostream &os, Indent indent=0) const

virtual void	Read (void *buffer)

virtual void	ReadImageInformation ()

virtual void	Register () const

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

virtual void	SetAbortGenerateData (bool _arg)

virtual void	SetByteOrder (const ByteOrder _arg)

void	SetByteOrderToBigEndian ()

void	SetByteOrderToLittleEndian ()

virtual void	SetComponentType (const IOComponentType _arg)

virtual void	SetCompressionType (const TCompressionType _arg)

void	SetDebug (bool debugFlag) const

virtual void	SetDimensions (unsigned int i, unsigned int dim)

virtual void	SetDirection (unsigned int i, std::vector< double > &direction)

virtual void	SetDirection (unsigned int i, vnl_vector< double > &direction)

virtual void	SetFileName (const char *_arg)

virtual void	SetFileType (const FileType _arg)

void	SetFileTypeToASCII ()

void	SetFileTypeToBinary ()

virtual void	SetIORegion (ImageIORegion _arg)

virtual void	SetKeepOriginalUID (bool _arg)

virtual void	SetLoadPrivateTags (bool _arg)

virtual void	SetLoadSequences (bool _arg)

virtual void	SetMaxSizeLoadEntry (long _arg)

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetNumberOfComponents (unsigned int _arg)

void	SetNumberOfDimensions (unsigned int)

virtual void	SetOrigin (unsigned int i, double origin)

virtual void	SetPixelType (const IOPixelType _arg)

virtual bool	SetPixelTypeInfo (const std::type_info &ptype)

virtual void	SetProgress (float _arg)

virtual void	SetReferenceCount (int)

virtual void	SetSpacing (unsigned int i, double spacing)

virtual void	SetUIDPrefix (const char *_arg)

virtual void	SetUseCompression (bool _arg)

virtual void	SetUseStreamedReading (bool _arg)

virtual void	SetUseStreamedWriting (bool _arg)

virtual bool	SupportsDimension (unsigned long dim)

virtual void	UnRegister () const

virtual void	UpdateOutputData ()

void	UpdateProgress (float amount)

virtual void	UseCompressionOff ()

virtual void	UseCompressionOn ()

virtual void	UseStreamedReadingOff ()

virtual void	UseStreamedReadingOn ()

virtual void	UseStreamedWritingOff ()

virtual void	UseStreamedWritingOn ()

virtual void	Write (const void *buffer)

virtual void	WriteImageInformation ()

Static Public Member Functions
static void	BreakOnError ()

static bool	GetGlobalWarningDisplay ()

static bool	GetLabelFromTag (const std::string &tag, std::string &labelId)

static bool	GetLoadPrivateTagsDefault ()

static bool	GetLoadSequencesDefault ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static void	LoadPrivateTagsDefaultOff ()

static void	LoadPrivateTagsDefaultOn ()

static void	LoadSequencesDefaultOff ()

static void	LoadSequencesDefaultOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

static void	SetLoadPrivateTagsDefault (bool b)

static void	SetLoadSequencesDefault (bool b)

Protected Types
typedef int	InternalReferenceCountType

Protected Member Functions
	GDCMImageIO ()

	~GDCMImageIO ()

void	AddSupportedReadExtension (const char *extension)

void	AddSupportedWriteExtension (const char *extension)

void	ComputeStrides ()

virtual void	GenerateData ()

virtual unsigned int	GetActualNumberOfSplitsForWritingCanStreamWrite (unsigned int numberOfRequestedSplits, const ImageIORegion &pasteRegion) const

SizeType	GetComponentStride () const

virtual unsigned int	GetPixelSize () const

SizeType	GetRowStride () const

SizeType	GetSliceStride () const

virtual ImageIORegion	GetSplitRegionForWritingCanStreamWrite (unsigned int ithPiece, unsigned int numberOfActualSplits, const ImageIORegion &pasteRegion) const

void	InternalReadImageInformation (std::ifstream &file)

bool	OpenGDCMFileForReading (std::ifstream &os, const char *filename)

bool	OpenGDCMFileForWriting (std::ofstream &os, const char *filename)

virtual void	PrintHeader (std::ostream &os, Indent indent) const

bool	PrintObservers (std::ostream &os, Indent indent) const

void	PrintSelf (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

void	ReadBufferAsASCII (std::istream &os, void *buffer, IOComponentType ctype, SizeType numberOfBytesToBeRead)

bool	ReadBufferAsBinary (std::istream &os, void *buffer, SizeType numberOfBytesToBeRead)

virtual void	Reset (const bool freeDynamic=true)

void	Resize (const unsigned int numDimensions, const unsigned int *dimensions)

void	WriteBufferAsASCII (std::ostream &os, const void *buffer, IOComponentType ctype, SizeType numberOfBytesToWrite)

Protected Attributes
ByteOrder	m_ByteOrder

IOComponentType	m_ComponentType

std::vector< SizeValueType >	m_Dimensions

std::vector< std::vector < double > >	m_Direction

std::string	m_FileName

FileType	m_FileType

std::string	m_FrameOfReferenceInstanceUID

bool	m_Initialized

ImageIORegion	m_IORegion

bool	m_KeepOriginalUID

long	m_MaxSizeLoadEntry

unsigned int	m_NumberOfComponents

unsigned int	m_NumberOfDimensions

std::vector< double >	m_Origin

IOPixelType	m_PixelType

InternalReferenceCountType	m_ReferenceCount

SimpleFastMutexLock	m_ReferenceCountLock

double	m_RescaleIntercept

double	m_RescaleSlope

std::string	m_SeriesInstanceUID

std::vector< double >	m_Spacing

std::vector< SizeType >	m_Strides

std::string	m_StudyInstanceUID

std::string	m_UIDPrefix

bool	m_UseCompression

bool	m_UseStreamedReading

bool	m_UseStreamedWriting

Private Member Functions
	GDCMImageIO (const Self &)

void	operator= (const Self &)

Private Attributes
std::string	m_BodyPart

TCompressionType	m_CompressionType

InternalHeader *	m_DICOMHeader

unsigned int	m_GlobalNumberOfDimensions

std::string	m_Institution

ImageIOBase::IOComponentType	m_InternalComponentType

bool	m_LoadPrivateTags

bool	m_LoadSequences

std::string	m_Manufacturer

std::string	m_Modality

std::string	m_Model

std::string	m_NumberOfSeriesInStudy

std::string	m_NumberOfStudyRelatedSeries

std::string	m_PatientAge

std::string	m_PatientDOB

std::string	m_PatientID

std::string	m_PatientName

std::string	m_PatientSex

std::string	m_ScanOptions

std::string	m_StudyDate

std::string	m_StudyDescription

std::string	m_StudyID

Static Private Attributes
static bool	m_LoadPrivateTagsDefault = true

static bool	m_LoadSequencesDefault = true

Detailed Description

ImageIO class for reading and writing DICOM V3.0 and ACR/NEMA 1&2 uncompressed images This class is only an adaptor to the gdcm library (currently gdcm 1.2.x is used by default):

GDCM 1.2 can be found at: http://creatis-www.insa-lyon.fr/Public/Gdcm/

CREATIS INSA - Lyon 2003-2008 http://www.creatis.insa-lyon.fr

Using the CMake variable: ITK_USE_SYSTEM_GDCM it is now possible to use a system installed GDCM 2.x release. GDCM 2.x is now being developped on sourceforge.net :

    http://gdcm.sourceforge.net

Documentation:

Warning

There are several restrictions to this current writer:

Eventhough during the writing process you pass in a DICOM file as input The output file may not contains ALL DICOM field from the input file. In particular:
- The SeQuence DICOM field (SQ).
- Fields from Private Dictionary
Some very long (>0xfff) binary fields are not loaded (typically 0029|0010), you need to explicitely set the maximum length of elements to load to be bigger (see Get/SetMaxSizeLoadEntry)
GDCMImageIO was not handling rescale slope/intercept properly. This is fixed as of 11/12/2007
In DICOM some field are stored directly using there binary representation. When loaded into the MetaDataDict some fields are converted to ASCII (only VR: OB/OW/OF and UN are encoded as mime64).

Definition at line 68 of file itkGDCMImageIO.h.

Member Typedef Documentation

typedef std::vector< std::string > itk::ImageIOBase::ArrayOfExtensionsType

inherited

Type for the list of strings to be used for extensions.

Definition at line 388 of file itkImageIOBase.h.

typedef vcl_size_t itk::ImageIOBase::BufferSizeType

inherited

Type for representing size of bytes, and or positions along a memory buffer

Definition at line 256 of file itkImageIOBase.h.

typedef SmartPointer<const Self> itk::LightProcessObject::ConstPointer

inherited

Definition at line 78 of file itkLightProcessObject.h.

typedef long itk::ImageIOBase::IndexValueType

inherited

Types for managing image size and image index components.

Definition at line 71 of file itkImageIOBase.h.

typedef int itk::LightObject::InternalReferenceCountType

protectedinherited

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 137 of file itkLightObject.h.

typedef SmartPointer<Self> itk::GDCMImageIO::Pointer

Definition at line 74 of file itkGDCMImageIO.h.

typedef GDCMImageIO itk::GDCMImageIO::Self

Standard class typedefs.

Definition at line 72 of file itkGDCMImageIO.h.

typedef std::streamoff itk::ImageIOBase::SizeType

inherited

Type for representing size of bytes, and or positions along a file

Definition at line 253 of file itkImageIOBase.h.

typedef unsigned long itk::ImageIOBase::SizeValueType

inherited

Definition at line 75 of file itkImageIOBase.h.

typedef ImageIOBase itk::GDCMImageIO::Superclass

Definition at line 73 of file itkGDCMImageIO.h.

Member Enumeration Documentation

enum itk::ImageIOBase::ByteOrder

inherited

Enums used to specify byte order; whether Big Endian or Little Endian. Some subclasses use this, some ignore it.

Enumerator
BigEndian
LittleEndian
OrderNotApplicable

Definition at line 207 of file itkImageIOBase.h.

enum itk::ImageIOBase::FileType

inherited

Enums used to specify write style: whether binary or ASCII. Some subclasses use this, some ignore it.

Enumerator
ASCII
Binary
TypeNotApplicable

Definition at line 203 of file itkImageIOBase.h.

enum itk::ImageIOBase::IOComponentType

inherited

Enums used to manipulate the component type. The component type refers to the actual storage class associated with either a SCALAR pixel type or elements of a compound pixel.

Enumerator
UNKNOWNCOMPONENTTYPE
UCHAR
CHAR
USHORT
SHORT
UINT
INT
ULONG
LONG
FLOAT
DOUBLE
CSHORT
CINT
CFLOAT
CDOUBLE

Definition at line 94 of file itkImageIOBase.h.

enum itk::ImageIOBase::IOPixelType

inherited

Enums used to manipulate the pixel type. The pixel type provides context for automatic data conversions (for instance, RGB to SCALAR, VECTOR to SCALAR).

Enumerator
UNKNOWNPIXELTYPE
SCALAR
RGB
RGBA
OFFSET
VECTOR
POINT
COVARIANTVECTOR
SYMMETRICSECONDRANKTENSOR
DIFFUSIONTENSOR3D
COMPLEX
FIXEDARRAY
MATRIX

Definition at line 86 of file itkImageIOBase.h.

enum itk::GDCMImageIO::TCompressionType

Set/Get a boolean to use the JPEG2000 compression or not.

Enumerator
JPEG
JPEG2000

Definition at line 238 of file itkGDCMImageIO.h.

Constructor & Destructor Documentation

itk::GDCMImageIO::GDCMImageIO ( )

protected

itk::GDCMImageIO::~GDCMImageIO ( )

protected

Definition at line 242 of file itkGDCMImageIO.cxx.

References m_DICOMHeader, and itk::InternalHeader::m_Header.

itk::GDCMImageIO::GDCMImageIO ( const Self & )

private

Member Function Documentation

virtual void itk::LightProcessObject::AbortGenerateDataOff ( )

virtualinherited

virtual void itk::LightProcessObject::AbortGenerateDataOn ( )

virtualinherited

Turn on and off the AbortGenerateData flag.

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *	cmd
	)

inherited

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

Definition at line 389 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), itk::ProgressAccumulator::RegisterInternalFilter(), otb::ImageFileWriter< TInputImage >::Update(), and otb::WriterWatcherBase::WriterWatcherBase().

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *	cmd
	)		const

inherited

Definition at line 401 of file itkObject.cxx.

References itk::SubjectImplementation::AddObserver().

void itk::ImageIOBase::AddSupportedReadExtension ( const char * extension )

protectedinherited

Insert an extension to the list of supported extensions for reading.

Definition at line 78 of file itkImageIOBase.cxx.

References itk::ImageIOBase::m_SupportedReadExtensions.

Referenced by itk::AnalyzeImageIO::AnalyzeImageIO(), itk::BioRadImageIO::BioRadImageIO(), itk::BMPImageIO::BMPImageIO(), itk::PNGImageIO::CanReadFile(), itk::JPEGImageIO::JPEGImageIO(), itk::LSMImageIO::LSMImageIO(), itk::MetaImageIO::MetaImageIO(), itk::MRCImageIO::MRCImageIO(), itk::NiftiImageIO::NiftiImageIO(), itk::TIFFImageIO::TIFFImageIO(), and itk::VTKImageIO2::VTKImageIO2().

void itk::ImageIOBase::AddSupportedWriteExtension ( const char * extension )

protectedinherited

Insert an extension to the list of supported extensions for writing.

Definition at line 83 of file itkImageIOBase.cxx.

References itk::ImageIOBase::m_SupportedWriteExtensions.

Referenced by itk::AnalyzeImageIO::AnalyzeImageIO(), itk::BioRadImageIO::BioRadImageIO(), itk::BMPImageIO::BMPImageIO(), itk::PNGImageIO::CanReadFile(), itk::JPEGImageIO::JPEGImageIO(), itk::LSMImageIO::LSMImageIO(), itk::MetaImageIO::MetaImageIO(), itk::MRCImageIO::MRCImageIO(), itk::NiftiImageIO::NiftiImageIO(), itk::TIFFImageIO::TIFFImageIO(), and itk::VTKImageIO2::VTKImageIO2().

void itk::LightObject::BreakOnError ( )

staticinherited

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

Definition at line 149 of file itkLightObject.cxx.

bool itk::GDCMImageIO::CanReadFile ( const char * filename )

virtual

Determine the file type. Returns true if this ImageIO can read the file specified.

Implements itk::ImageIOBase.

Definition at line 323 of file itkGDCMImageIO.cxx.

References OpenGDCMFileForReading().

virtual bool itk::ImageIOBase::CanStreamRead ( void )

inlinevirtualinherited

Determine if the ImageIO can stream reading from this file. Default is false.

Reimplemented in itk::MetaImageIO, and itk::StreamingImageIOBase.

Definition at line 292 of file itkImageIOBase.h.

virtual bool itk::ImageIOBase::CanStreamWrite ( void )

inlinevirtualinherited

Determine if the ImageIO can stream writing to this file. Default is false.

There are two types of non exclusive streaming: pasteing subregions, and iterative If true then

Reimplemented in itk::MetaImageIO, and itk::StreamingImageIOBase.

Definition at line 316 of file itkImageIOBase.h.

Referenced by itk::ImageIOBase::GetActualNumberOfSplitsForWriting(), and itk::ImageIOBase::GetSplitRegionForWriting().

bool itk::GDCMImageIO::CanWriteFile ( const char * name )

virtual

Determine the file type. Returns true if this ImageIO can write the file specified. GDCM triggers on ".dcm" and ".dicom".

Implements itk::ImageIOBase.

Definition at line 1275 of file itkGDCMImageIO.cxx.

void itk::ImageIOBase::ComputeStrides ( )

protectedinherited

Calculates the different strides (distance from one thing to the next). Upon return, strides[0] = bytes to get to the next component of a pixel, strides[1] = bytes to get to the next pixel in x direction, strides[2] = bytes to get to the next row in y direction, strides[3] = bytes to get to the next slice in z direction, etc.

Definition at line 540 of file itkImageIOBase.cxx.

References itk::ImageIOBase::GetComponentSize(), itk::ImageIOBase::m_Dimensions, itk::ImageIOBase::m_NumberOfComponents, itk::ImageIOBase::m_NumberOfDimensions, and itk::ImageIOBase::m_Strides.

Referenced by itk::MINC2ImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), and itk::ImageIOBase::Resize().

virtual::itk::LightObject::Pointer itk::GDCMImageIO::CreateAnother ( void ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightProcessObject.

void itk::Object::DebugOff ( ) const

virtualinherited

Turn debugging output off.

Definition at line 253 of file itkObject.cxx.

void itk::Object::DebugOn ( ) const

virtualinherited

Turn debugging output on.

Definition at line 242 of file itkObject.cxx.

void itk::LightObject::Delete ( )

virtualinherited

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Delete a itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C++ delete method will not work with reference counting.

Definition at line 88 of file itkLightObject.cxx.

virtual void itk::LightProcessObject::GenerateData ( void )

inlineprotectedvirtualinherited

This method causes the filter to generate its output.

Reimplemented in itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >, itk::ClassifierBase< TDataContainer >, itk::ClassifierBase< TInputImage >, itk::ClassifierBase< TSample >, itk::ClassifierBase< itk::Statistics::ListSample< TInputImage::PixelType > >, itk::ImageClassifierBase< TInputImage, TClassifiedImage >, itk::LevelSetNeighborhoodExtractor< TLevelSet >, itk::ImageModelEstimatorBase< TInputImage, TMembershipFunction >, itk::ImageGaussianModelEstimator< TInputImage, TMembershipFunction, TTrainingImage >, itk::Statistics::SampleClassifier< TSample >, itk::Statistics::SampleClassifier< itk::Statistics::ListSample< TInputImage::PixelType > >, otb::SVMClassifier< TSample, TLabel >, itk::Statistics::SampleClassifierWithMask< TSample, TMaskSample >, and otb::SVMMarginSampler< TSample, TModel >.

Definition at line 121 of file itkLightProcessObject.h.

ImageIORegion itk::ImageIOBase::GenerateStreamableReadRegionFromRequestedRegion ( const ImageIORegion & requested ) const

virtualinherited

Method for supporting streaming. Given a requested region, determine what could be the region that we can read from the file. This is called the streamable region, which will be equal or smaller than the LargestPossibleRegion (unless it was dimensionaly clipped) and greater or equal to the RequestedRegion

the resulting IORegion may be a greater dimensions the the requested IORegion, if the the derived class is unable to read the requested region. For example if the file has a size of [ 10, 10, 10] but the requested region is [10, 10] the return may be 3 dimensions.

Given a requested region, determine what could be the region that we can read from the file. This is called the streamable region, which will be smaller than the LargestPossibleRegion and greater or equal to the RequestedRegion

Reimplemented in itk::MetaImageIO, itk::NiftiImageIO, and itk::StreamingImageIOBase.

Definition at line 1218 of file itkImageIOBase.cxx.

References itk::ImageIORegion::GetImageDimension(), itk::ImageIORegion::SetIndex(), and itk::ImageIORegion::SetSize().

virtual const bool& itk::LightProcessObject::GetAbortGenerateData ( )

virtualinherited

Get the AbortGenerateData flag for the process object. Process objects may handle premature termination of execution in different ways.

unsigned int itk::ImageIOBase::GetActualNumberOfSplitsForWriting	(	unsigned int	numberOfRequestedSplits,
		const ImageIORegion &	pasteRegion,
		const ImageIORegion &	largestPossibleRegion
	)

virtualinherited

Before this method is called all the configuration will be done, that is Streaming/PasteRegion/Compression/Filename etc If pasting is being used the number of requested splits is for that region not the largest. The derived ImageIO class should verify that the file is capable of being writen with this configuration. If pasted is enabled and is not support or does not work with the file, then an excepetion should be thrown.

The default implementation depends on CanStreamWrite. If false then 1 is returned (unless pasting is indicated), so that the whole file will be updated in one region. If true then its assumed that any arbitrary region can be writen to any file. So the users request will be respected. If a derived class has more restictive conditions then they should be checked

Reimplemented in itk::MetaImageIO, and itk::StreamingImageIOBase.

Definition at line 1122 of file itkImageIOBase.cxx.

References itk::ImageIOBase::CanStreamWrite(), itk::ImageIOBase::GetActualNumberOfSplitsForWritingCanStreamWrite(), and itk::ImageIOBase::GetFileName().

unsigned int itk::ImageIOBase::GetActualNumberOfSplitsForWritingCanStreamWrite	(	unsigned int	numberOfRequestedSplits,
		const ImageIORegion &	pasteRegion
	)		const

protectedvirtualinherited

an implementation of ImageRegionSplitter:GetNumberOfSplits

Definition at line 1093 of file itkImageIOBase.cxx.

References itk::ImageIORegion::GetImageDimension(), itk::ImageIORegion::GetSize(), and itk::value_type().

Referenced by itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), and itk::ImageIOBase::GetActualNumberOfSplitsForWriting().

void itk::GDCMImageIO::GetBodyPart ( char * part )

Definition at line 2284 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_BodyPart.

Referenced by InternalReadImageInformation().

virtual ByteOrder itk::ImageIOBase::GetByteOrder ( ) const

virtualinherited

Referenced by itk::NrrdImageIO::Write().

std::string itk::ImageIOBase::GetByteOrderAsString ( ByteOrder t ) const

inherited

Convenience method returns the ByteOrder as a string. This can be used for writing output files.

Definition at line 739 of file itkImageIOBase.cxx.

References itk::ImageIOBase::BigEndian, itk::ImageIOBase::LittleEndian, and itk::ImageIOBase::OrderNotApplicable.

Referenced by itk::ImageIOBase::PrintSelf().

Command * itk::Object::GetCommand ( unsigned long tag )

inherited

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

Definition at line 414 of file itkObject.cxx.

References itk::Object::GetCommand(), and NULL.

Referenced by itk::Object::GetCommand().

unsigned int itk::ImageIOBase::GetComponentSize ( ) const

virtualinherited

Compute the size (in bytes) of the components of a pixel. For example, and RGB pixel of unsigned char would have a component size of 1 byte. This method can be invoked only after the component type is set.

Reimplemented in itk::IPLCommonImageIO.

Definition at line 683 of file itkImageIOBase.cxx.

References itk::ImageIOBase::CDOUBLE, itk::ImageIOBase::CFLOAT, itk::ImageIOBase::CHAR, itk::ImageIOBase::CINT, itk::ImageIOBase::CSHORT, itk::ImageIOBase::DOUBLE, itk::ImageIOBase::FLOAT, itk::ImageIOBase::INT, itk::ImageIOBase::LONG, itk::ImageIOBase::m_ComponentType, itk::ImageIOBase::SHORT, itk::ImageIOBase::UCHAR, itk::ImageIOBase::UINT, itk::ImageIOBase::ULONG, itk::ImageIOBase::UNKNOWNCOMPONENTTYPE, and itk::ImageIOBase::USHORT.

Referenced by itk::ImageIOBase::ComputeStrides(), itk::ImageIOBase::GetPixelSize(), itk::VTKImageIO::Read(), itk::VTKImageIO2::Read(), itk::VTKImageIO::Write(), and itk::VTKImageIO2::Write().

ImageIOBase::SizeType itk::ImageIOBase::GetComponentStride ( ) const

protectedinherited

Convenient method for accessing number of bytes to get to the next pixel component. Returns m_Strides[0].

Definition at line 584 of file itkImageIOBase.cxx.

virtual IOComponentType itk::ImageIOBase::GetComponentType ( ) const

virtualinherited

Referenced by itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::TIFFImageIO::InternalWrite(), itk::BioRadImageIO::Read(), itk::VTKImageIO::Read(), itk::VTKImageIO2::Read(), itk::StimulateImageIO::Read(), itk::ImageIOBase::SetPixelTypeInfo(), itk::MRCImageIO::UpdateHeaderFromImageIO(), itk::LSMImageIO::Write(), itk::BioRadImageIO::Write(), itk::VTKImageIO::Write(), itk::VTKImageIO2::Write(), itk::JPEGImageIO::Write(), itk::StimulateImageIO::Write(), itk::MINC2ImageIO::Write(), Write(), itk::VTKImageIO2::WriteImageInformation(), and itk::PNGImageIO::WriteSlice().

std::string itk::ImageIOBase::GetComponentTypeAsString ( IOComponentType t ) const

inherited

Convenience method returns the IOComponentType as a string. This can be used for writing output files.

Definition at line 755 of file itkImageIOBase.cxx.

References itk::ImageIOBase::CDOUBLE, itk::ImageIOBase::CFLOAT, itk::ImageIOBase::CHAR, itk::ImageIOBase::CINT, itk::ImageIOBase::CSHORT, itk::ImageIOBase::DOUBLE, itk::ImageIOBase::FLOAT, itk::ImageIOBase::INT, itk::ImageIOBase::LONG, itk::ImageIOBase::SHORT, itk::ImageIOBase::UCHAR, itk::ImageIOBase::UINT, itk::ImageIOBase::ULONG, itk::ImageIOBase::UNKNOWNCOMPONENTTYPE, and itk::ImageIOBase::USHORT.

Referenced by PrintSelf(), itk::ImageIOBase::PrintSelf(), itk::NiftiImageIO::Read(), itk::MRCImageIO::UpdateHeaderFromImageIO(), itk::VTKImageIO::Write(), and itk::VTKImageIO2::WriteImageInformation().

const std::type_info & itk::ImageIOBase::GetComponentTypeInfo ( ) const

virtualinherited

Reimplemented in itk::IPLCommonImageIO.

Definition at line 183 of file itkImageIOBase.cxx.

References itk::ImageIOBase::CDOUBLE, itk::ImageIOBase::CFLOAT, itk::ImageIOBase::CHAR, itk::ImageIOBase::CINT, itk::ImageIOBase::CSHORT, itk::ImageIOBase::DOUBLE, itk::ImageIOBase::FLOAT, itk::ImageIOBase::INT, itk::ImageIOBase::LONG, itk::ImageIOBase::m_ComponentType, itk::ImageIOBase::SHORT, itk::ImageIOBase::UCHAR, itk::ImageIOBase::UINT, itk::ImageIOBase::ULONG, itk::ImageIOBase::UNKNOWNCOMPONENTTYPE, and itk::ImageIOBase::USHORT.

virtual TCompressionType itk::GDCMImageIO::GetCompressionType ( ) const

virtual

bool itk::Object::GetDebug ( ) const

inherited

Get the value of the debug flag.

Definition at line 264 of file itkObject.cxx.

Referenced by otb::ogr::ImageReference< double >::GetDebug().

std::vector< double > itk::ImageIOBase::GetDefaultDirection ( unsigned int k ) const

virtualinherited

Return the directions to be assigned by default to recipient images whose dimension is smaller than the image dimension in file.

Return the directions that this particular ImageIO would use by default in the case the recipient image dimension is smaller than the dimension of the image in file.

Reimplemented in itk::AnalyzeImageIO.

Definition at line 1276 of file itkImageIOBase.cxx.

Referenced by itk::AnalyzeImageIO::GetDefaultDirection().

virtual unsigned int itk::ImageIOBase::GetDimensions ( unsigned int i ) const

inlinevirtualinherited

Definition at line 107 of file itkImageIOBase.h.

Referenced by itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::NrrdImageIO::Read(), itk::MetaImageIO::Read(), itk::MINC2ImageIO::Read(), itk::StreamingImageIOBase::RequestedToStream(), itk::MINC2ImageIO::SetSliceScalingFromLocalScaling(), itk::StreamingImageIOBase::StreamWriteBufferAsBinary(), itk::NrrdImageIO::Write(), itk::VTKImageIO::Write(), itk::MINC2ImageIO::Write(), itk::VTKImageIO2::WriteImageInformation(), and itk::PNGImageIO::WriteSlice().

virtual std::vector<double> itk::ImageIOBase::GetDirection ( unsigned int i ) const

inlinevirtualinherited

Reimplemented in itk::AnalyzeImageIO.

Definition at line 130 of file itkImageIOBase.h.

Referenced by itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::AnalyzeImageIO::GetDirection(), itk::NiftiImageIO::SetNIfTIOrientationFromImageIO(), and itk::NrrdImageIO::Write().

virtual const char* itk::ImageIOBase::GetFileName ( ) const

virtualinherited

Referenced by itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::ImageIOBase::GetActualNumberOfSplitsForWriting(), itk::TIFFImageIO::InternalWrite(), itk::PNGImageIO::Read(), itk::JPEGImageIO::Read(), itk::NrrdImageIO::Read(), itk::MetaImageIO::Read(), itk::NiftiImageIO::Read(), itk::BMPImageIO::ReadImageInformation(), itk::JPEGImageIO::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::IPLCommonImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::NiftiImageIO::SetImageIOMetadataFromNIfTI(), itk::NrrdImageIO::Write(), and itk::PNGImageIO::WriteSlice().

virtual FileType itk::ImageIOBase::GetFileType ( ) const

virtualinherited

Referenced by itk::VTKImageIO::InternalReadImageInformation(), itk::VTKImageIO2::InternalReadImageInformation(), itk::VTKImageIO::Write(), itk::NrrdImageIO::Write(), and itk::VTKImageIO2::WriteImageInformation().

std::string itk::ImageIOBase::GetFileTypeAsString ( FileType t ) const

inherited

Convenience method returns the FileType as a string. This can be used for writing output files.

Definition at line 723 of file itkImageIOBase.cxx.

References itk::ImageIOBase::ASCII, itk::ImageIOBase::Binary, and itk::ImageIOBase::TypeNotApplicable.

Referenced by itk::ImageIOBase::PrintSelf().

virtual const char* itk::GDCMImageIO::GetFrameOfReferenceInstanceUID ( ) const

virtual

bool itk::Object::GetGlobalWarningDisplay ( )

staticinherited

Get the value of the global debug output control flag.

Definition at line 381 of file itkObject.cxx.

ImageIOBase::SizeType itk::ImageIOBase::GetImageSizeInBytes ( ) const

inherited

Return the number of bytes in the image.

Definition at line 577 of file itkImageIOBase.cxx.

Referenced by itk::BioRadImageIO::Read(), itk::GiplImageIO::Read(), itk::VTKImageIO::Read(), itk::VTKImageIO2::Read(), itk::VoxBoCUBImageIO::Read(), itk::StimulateImageIO::Read(), itk::PhilipsRECImageIO::Read(), itk::AnalyzeImageIO::Read(), itk::Bruker2DSEQImageIO::Read(), itk::DICOMImageIO2::ReadDataCallback(), itk::BioRadImageIO::Write(), itk::VTKImageIO::Write(), itk::VTKImageIO2::Write(), itk::StimulateImageIO::Write(), and Write().

ImageIOBase::SizeType itk::ImageIOBase::GetImageSizeInComponents ( ) const

inherited

Return the number of pixels times the number of components in the image.

Definition at line 570 of file itkImageIOBase.cxx.

Referenced by itk::BioRadImageIO::Read(), itk::VTKImageIO::Read(), itk::VTKImageIO2::Read(), itk::NiftiImageIO::Read(), itk::StimulateImageIO::Read(), itk::VTKImageIO::Write(), itk::BioRadImageIO::Write(), itk::VTKImageIO2::Write(), and itk::StimulateImageIO::Write().

ImageIOBase::SizeType itk::ImageIOBase::GetImageSizeInPixels ( ) const

inherited

Return the number of pixels in the image.

Definition at line 555 of file itkImageIOBase.cxx.

Referenced by itk::MetaImageIO::Read(), itk::AnalyzeImageIO::Read(), itk::VTKImageIO::Write(), and itk::VTKImageIO2::WriteImageInformation().

void itk::GDCMImageIO::GetInstitution ( char * ins )

Definition at line 2326 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_Institution.

Referenced by InternalReadImageInformation().

virtual IOComponentType itk::GDCMImageIO::GetInternalComponentType ( ) const

virtual

Get the original component type of the image. This differs from ComponentType which may change as a function of rescale slope and intercept.

virtual const ImageIORegion& itk::ImageIOBase::GetIORegion ( )

virtualinherited

Referenced by itk::NiftiImageIO::Read(), itk::StreamingImageIOBase::RequestedToStream(), and itk::VTKImageIO::Write().

virtual bool itk::GDCMImageIO::GetKeepOriginalUID ( ) const

virtual

bool itk::GDCMImageIO::GetLabelFromTag	(	const std::string &	tag,
		std::string &	labelId
	)

static

Method for consulting the DICOM dictionary and recovering the text description of a field using its numeric tag represented as a string. If the tagkey is not found in the dictionary then this static method return false and the value "Unknown " in the labelId. If the tagkey is found then this static method returns true and the actual string descriptor of the tagkey is returned in the variable labelId.

Definition at line 2354 of file itkGDCMImageIO.cxx.

virtual bool itk::GDCMImageIO::GetLoadPrivateTags ( ) const

virtual

static bool itk::GDCMImageIO::GetLoadPrivateTagsDefault ( )

inlinestatic

Definition at line 234 of file itkGDCMImageIO.h.

virtual bool itk::GDCMImageIO::GetLoadSequences ( ) const

virtual

static bool itk::GDCMImageIO::GetLoadSequencesDefault ( )

inlinestatic

Definition at line 217 of file itkGDCMImageIO.h.

void itk::GDCMImageIO::GetManufacturer ( char * manu )

Definition at line 2319 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_Manufacturer.

Referenced by InternalReadImageInformation().

MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void )

inherited

Returns: A reference to this objects MetaDataDictionary.

Warning: This reference may be changed.

Definition at line 532 of file itkObject.cxx.

References NULL.

const MetaDataDictionary & itk::Object::GetMetaDataDictionary ( void ) const

inherited

Returns: A constant reference to this objects MetaDataDictionary.

Definition at line 543 of file itkObject.cxx.

References NULL.

void itk::GDCMImageIO::GetModality ( char * modality )

Definition at line 2312 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_Modality.

Referenced by InternalReadImageInformation().

void itk::GDCMImageIO::GetModel ( char * model )

Definition at line 2333 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_Model.

Referenced by InternalReadImageInformation().

unsigned long itk::Object::GetMTime ( void ) const

virtualinherited

Return this objects modified time.

Return the modification for this object.

Definition at line 286 of file itkObject.cxx.

Referenced by itk::DeformationFieldSource< TOutputImage >::GetMTime(), itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >::GetMTime(), itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), otb::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >::GetMTime(), itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >::GetMTime(), itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< TDimension >::GetMTime(), itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >::GetMTime(), itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime(), otb::Function::NoStretchRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), otb::Function::StandardRenderingFunction< TPixel, TRGBPixel, TPixelRepresentationFunction, TTransferFunction >::Initialize(), itk::VTKImageExportBase::PipelineModifiedCallback(), and itk::ProcessObject::UpdateOutputInformation().

virtual const char* itk::GDCMImageIO::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageIOBase.

Reimplemented in itk::DicomImageIO.

virtual const unsigned int& itk::ImageIOBase::GetNumberOfComponents ( )

virtualinherited

Referenced by itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::ImageIOBase::GetPixelSize(), itk::TIFFImageIO::InternalWrite(), itk::BMPImageIO::Read(), itk::NrrdImageIO::Read(), itk::NiftiImageIO::Read(), itk::PNGImageIO::ReadImageInformation(), itk::JPEGImageIO::ReadImageInformation(), itk::NrrdImageIO::SupportsDimension(), itk::LSMImageIO::Write(), itk::VTKImageIO::Write(), itk::NrrdImageIO::Write(), itk::MINC2ImageIO::Write(), Write(), itk::VTKImageIO2::WriteImageInformation(), itk::PNGImageIO::WriteSlice(), and itk::JPEGImageIO::WriteSlice().

virtual unsigned int itk::ImageIOBase::GetNumberOfDimensions ( ) const

virtualinherited

Referenced by itk::Brains2MaskImageIO::CanReadFile(), itk::ImageSeriesReader< TOutputImage >::ComputeMovingDimensionIndex(), itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::VTKImageIO2::InternalReadImageInformation(), itk::PNGImageIO::Read(), itk::GiplImageIO::Read(), itk::NrrdImageIO::Read(), itk::MetaImageIO::Read(), itk::NiftiImageIO::Read(), itk::PhilipsRECImageIO::Read(), itk::Bruker2DSEQImageIO::Read(), itk::MetaImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), itk::StreamingImageIOBase::RequestedToStream(), itk::MRCImageIO::UpdateHeaderFromImageIO(), itk::VTKImageIO::Write(), itk::NrrdImageIO::Write(), itk::BioRadImageIO::Write(), itk::JPEGImageIO::Write(), itk::StimulateImageIO::Write(), and itk::VTKImageIO2::WriteImageInformation().

void itk::GDCMImageIO::GetNumberOfSeriesInStudy ( char * series )

Definition at line 2291 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_NumberOfSeriesInStudy.

Referenced by InternalReadImageInformation().

void itk::GDCMImageIO::GetNumberOfStudyRelatedSeries ( char * series )

Definition at line 2298 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_NumberOfStudyRelatedSeries.

Referenced by InternalReadImageInformation().

virtual double itk::ImageIOBase::GetOrigin ( unsigned int i ) const

inlinevirtualinherited

Definition at line 113 of file itkImageIOBase.h.

Referenced by itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::NiftiImageIO::SetNIfTIOrientationFromImageIO(), itk::NrrdImageIO::Write(), itk::MINC2ImageIO::Write(), and itk::VTKImageIO2::WriteImageInformation().

void itk::GDCMImageIO::GetPatientAge ( char * age )

Definition at line 2256 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_PatientAge.

Referenced by InternalReadImageInformation().

void itk::GDCMImageIO::GetPatientDOB ( char * dob )

Definition at line 2270 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_PatientDOB.

Referenced by InternalReadImageInformation().

void itk::GDCMImageIO::GetPatientID ( char * id )

Definition at line 2242 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_PatientID.

Referenced by InternalReadImageInformation().

void itk::GDCMImageIO::GetPatientName ( char * name )

Convenience methods to query patient information and scanner information. These methods are here for compatibility with the DICOMImageIO2 class and as such should not be used in any new code. They rely on properly preallocated buffer, which is not a good practice. Instead user are encourage to use directly the GetValueFromTag function

Definition at line 2235 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_PatientName.

Referenced by InternalReadImageInformation().

void itk::GDCMImageIO::GetPatientSex ( char * sex )

Definition at line 2249 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_PatientSex.

Referenced by InternalReadImageInformation().

unsigned int itk::ImageIOBase::GetPixelSize ( ) const

protectedvirtualinherited

Compute the size (in bytes) of the pixel. For example, and RGB pixel of unsigned char would have size 3 bytes.

Definition at line 669 of file itkImageIOBase.cxx.

References itk::ImageIOBase::GetComponentSize(), itk::ImageIOBase::GetNumberOfComponents(), itk::ImageIOBase::m_ComponentType, itk::ImageIOBase::m_PixelType, itk::ImageIOBase::UNKNOWNCOMPONENTTYPE, and itk::ImageIOBase::UNKNOWNPIXELTYPE.

Referenced by itk::StreamingImageIOBase::StreamWriteBufferAsBinary().

ImageIOBase::SizeType itk::ImageIOBase::GetPixelStride ( ) const

virtualinherited

Convenient method for accessing the number of bytes to get to the next pixel. Returns m_Strides[1];

Please note that this methods depends the private methods ComputeStrides being called, otherwise this is the incorrect value.

Definition at line 591 of file itkImageIOBase.cxx.

virtual IOPixelType itk::ImageIOBase::GetPixelType ( ) const

virtualinherited

Referenced by itk::AnalyzeImageIO::DefineHeaderObjectDataType(), itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::NrrdImageIO::Read(), itk::NiftiImageIO::Read(), itk::ImageIOBase::SetPixelTypeInfo(), itk::MRCImageIO::UpdateHeaderFromImageIO(), itk::NrrdImageIO::Write(), itk::VTKImageIO::Write(), and itk::VTKImageIO2::WriteImageInformation().

std::string itk::ImageIOBase::GetPixelTypeAsString ( IOPixelType t ) const

inherited

Convenience method returns the IOPixelType as a string. This can be used for writing output files.

Definition at line 796 of file itkImageIOBase.cxx.

References itk::ImageIOBase::COMPLEX, itk::ImageIOBase::COVARIANTVECTOR, itk::ImageIOBase::DIFFUSIONTENSOR3D, itk::ImageIOBase::OFFSET, itk::ImageIOBase::POINT, itk::ImageIOBase::RGB, itk::ImageIOBase::RGBA, itk::ImageIOBase::SCALAR, itk::ImageIOBase::SYMMETRICSECONDRANKTENSOR, itk::ImageIOBase::UNKNOWNPIXELTYPE, and itk::ImageIOBase::VECTOR.

Referenced by itk::ImageIOBase::PrintSelf(), and itk::MRCImageIO::UpdateHeaderFromImageIO().

virtual const float& itk::LightProcessObject::GetProgress ( )

virtualinherited

Get the execution progress of a process object. The progress is a floating number between (0,1), 0 meaning no progress; 1 meaning the filter has completed execution.

virtual int itk::LightObject::GetReferenceCount ( ) const

inlinevirtualinherited

Gets the reference count on this object.

Definition at line 105 of file itkLightObject.h.

virtual double itk::GDCMImageIO::GetRescaleIntercept ( ) const

virtual

virtual double itk::GDCMImageIO::GetRescaleSlope ( ) const

virtual

Macro to access Rescale Slope and Rescale Intercept. Which are needed to rescale properly image when needed. User then need to Always check those value when access value from the DICOM header

ImageIOBase::SizeType itk::ImageIOBase::GetRowStride ( ) const

protectedinherited

Convenient method for accessing the number of bytes to get to the next row. Returns m_Strides[2].

Definition at line 598 of file itkImageIOBase.cxx.

void itk::GDCMImageIO::GetScanOptions ( char * options )

Definition at line 2340 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_ScanOptions.

Referenced by InternalReadImageInformation().

virtual const char* itk::GDCMImageIO::GetSeriesInstanceUID ( ) const

virtual

ImageIOBase::SizeType itk::ImageIOBase::GetSliceStride ( ) const

protectedinherited

Convenient method for accessing the number of bytes to get to the next slice. Returns m_Strides[3].

Definition at line 605 of file itkImageIOBase.cxx.

virtual double itk::ImageIOBase::GetSpacing ( unsigned int i ) const

inlinevirtualinherited

Definition at line 121 of file itkImageIOBase.h.

Referenced by itk::StreamingImageIOBase::GetActualNumberOfSplitsForWriting(), itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), itk::NiftiImageIO::SetNIfTIOrientationFromImageIO(), itk::NrrdImageIO::Write(), itk::MINC2ImageIO::Write(), and itk::VTKImageIO2::WriteImageInformation().

ImageIORegion itk::ImageIOBase::GetSplitRegionForWriting	(	unsigned int	ithPiece,
		unsigned int	numberOfActualSplits,
		const ImageIORegion &	pasteRegion,
		const ImageIORegion &	largestPossibleRegion
	)

virtualinherited

returns the ith IORegion

numberOfActualSplits should be the value returned from GetActualNumberOfSplitsForWriting with the same parameters

Derieved classes should overload this method to return a compatible region

Reimplemented in itk::MetaImageIO.

Definition at line 1200 of file itkImageIOBase.cxx.

References itk::ImageIOBase::CanStreamWrite(), and itk::ImageIOBase::GetSplitRegionForWritingCanStreamWrite().

ImageIORegion itk::ImageIOBase::GetSplitRegionForWritingCanStreamWrite	(	unsigned int	ithPiece,
		unsigned int	numberOfActualSplits,
		const ImageIORegion &	pasteRegion
	)		const

protectedvirtualinherited

an implementation of ImageRegionSplitter:GetSplit

Definition at line 1143 of file itkImageIOBase.cxx.

References itk::ImageIORegion::GetImageDimension(), itk::ImageIORegion::GetIndex(), itk::ImageIORegion::GetSize(), itk::ImageIORegion::SetIndex(), itk::ImageIORegion::SetSize(), and itk::value_type().

Referenced by itk::MetaImageIO::GetSplitRegionForWriting(), and itk::ImageIOBase::GetSplitRegionForWriting().

void itk::GDCMImageIO::GetStudyDate ( char * date )

Definition at line 2305 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_StudyDate.

Referenced by InternalReadImageInformation().

void itk::GDCMImageIO::GetStudyDescription ( char * desc )

Definition at line 2277 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_StudyDescription.

Referenced by InternalReadImageInformation().

void itk::GDCMImageIO::GetStudyID ( char * id )

Definition at line 2263 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary(), and m_StudyID.

Referenced by InternalReadImageInformation().

virtual const char* itk::GDCMImageIO::GetStudyInstanceUID ( ) const

virtual

Access the generated DICOM UID's.

const ImageIOBase::ArrayOfExtensionsType & itk::ImageIOBase::GetSupportedReadExtensions ( ) const

inherited

This method returns an array with the list of filename extensions supported for reading by this ImageIO class. This is intended to facilitate GUI and application level integration.

Definition at line 73 of file itkImageIOBase.cxx.

References itk::ImageIOBase::m_SupportedReadExtensions.

const ImageIOBase::ArrayOfExtensionsType & itk::ImageIOBase::GetSupportedWriteExtensions ( ) const

inherited

This method returns an array with the list of filename extensions supported for writing by this ImageIO class. This is intended to facilitate GUI and application level integration.

Definition at line 67 of file itkImageIOBase.cxx.

References itk::ImageIOBase::m_SupportedWriteExtensions.

virtual const char* itk::GDCMImageIO::GetUIDPrefix ( ) const

virtual

Macro to access the DICOM UID prefix. By default this is the ITK root id. This default can be overriden if the exam is for example part of an existing study.

virtual bool itk::ImageIOBase::GetUseCompression ( ) const

virtualinherited

Referenced by itk::MetaImageIO::GetActualNumberOfSplitsForWriting(), and itk::NrrdImageIO::Write().

virtual bool itk::ImageIOBase::GetUseStreamedReading ( ) const

virtualinherited

virtual bool itk::ImageIOBase::GetUseStreamedWriting ( ) const

virtualinherited

bool itk::GDCMImageIO::GetValueFromTag	(	const std::string &	tag,
		std::string &	value
	)

More general method to retrieve an arbitrary DICOM value based on a DICOM Tag (eg "0123|4567"). WARNING: You need to use the lower case for hex 0x[a-f], for instance: "0020|000d" instead of "0020|000D" (the latter won't work)

Definition at line 2347 of file itkGDCMImageIO.cxx.

References itk::Object::GetMetaDataDictionary().

static void itk::Object::GlobalWarningDisplayOff ( )

inlinestaticinherited

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

Referenced by itk::OutputWindow::DisplayText(), itk::Win32OutputWindow::PromptText(), and itk::Win32OutputWindow::WndProc().

static void itk::Object::GlobalWarningDisplayOn ( )

inlinestaticinherited

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

bool itk::Object::HasObserver ( const EventObject & event ) const

inherited

Return true if an observer is registered for this event.

Definition at line 467 of file itkObject.cxx.

void itk::GDCMImageIO::InternalReadImageInformation ( std::ifstream & file )

protected

Definition at line 774 of file itkGDCMImageIO.cxx.

Referenced by ReadImageInformation().

void itk::Object::InvokeEvent ( const EventObject & event )

inherited

Call Execute on all the Commands observing this event id.

Definition at line 446 of file itkObject.cxx.

Referenced by otb::Wrapper::Application::AddProcess(), itk::ParallelSparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::IterateThreaderCallback(), and itk::VTKImageExportBase::UpdateDataCallback().

void itk::Object::InvokeEvent ( const EventObject & event ) const

inherited

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

Definition at line 457 of file itkObject.cxx.

virtual void itk::GDCMImageIO::KeepOriginalUIDOff ( )

virtual

virtual void itk::GDCMImageIO::KeepOriginalUIDOn ( )

virtual

static void itk::GDCMImageIO::LoadPrivateTagsDefaultOff ( )

inlinestatic

Definition at line 232 of file itkGDCMImageIO.h.

static void itk::GDCMImageIO::LoadPrivateTagsDefaultOn ( )

inlinestatic

Definition at line 230 of file itkGDCMImageIO.h.

virtual void itk::GDCMImageIO::LoadPrivateTagsOff ( )

virtual

virtual void itk::GDCMImageIO::LoadPrivateTagsOn ( )

virtual

static void itk::GDCMImageIO::LoadSequencesDefaultOff ( )

inlinestatic

Definition at line 215 of file itkGDCMImageIO.h.

static void itk::GDCMImageIO::LoadSequencesDefaultOn ( )

inlinestatic

Definition at line 213 of file itkGDCMImageIO.h.

virtual void itk::GDCMImageIO::LoadSequencesOff ( )

virtual

virtual void itk::GDCMImageIO::LoadSequencesOn ( )

virtual

void itk::Object::Modified ( void ) const

virtualinherited

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Make sure this object's modified time is greater than all others.

Definition at line 297 of file itkObject.cxx.

static Pointer itk::GDCMImageIO::New ( )

static

Method for creation through the object factory.

bool itk::GDCMImageIO::OpenGDCMFileForReading	(	std::ifstream &	os,
		const char *	filename
	)

protected

Definition at line 251 of file itkGDCMImageIO.cxx.

Referenced by CanReadFile(), and InternalReadImageInformation().

bool itk::GDCMImageIO::OpenGDCMFileForWriting	(	std::ofstream &	os,
		const char *	filename
	)

protected

Definition at line 281 of file itkGDCMImageIO.cxx.

Referenced by Write().

void itk::GDCMImageIO::operator= ( const Self & )

private

void itk::LightObject::Print	(	std::ostream &	os,
		Indent	indent = `0`
	)		const

inherited

Cause the object to print itself out.

Avoid DLL boundary problems. This function will be common to all itk objects. It just calls the header/self/trailer virtual print methods, which can be overriden by subclasses (any itk object).

Definition at line 135 of file itkLightObject.cxx.

References itk::Indent::GetNextIndent().

Referenced by itk::operator<<().

void itk::LightObject::PrintHeader	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtualinherited

Define a default print header for all objects.

Definition at line 320 of file itkLightObject.cxx.

bool itk::Object::PrintObservers	(	std::ostream &	os,
		Indent	indent
	)		const

protectedinherited

Definition at line 478 of file itkObject.cxx.

void itk::GDCMImageIO::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Chaining method to print an object's instance variables, as well as its superclasses.

Reimplemented from itk::LightProcessObject.

Definition at line 2395 of file itkGDCMImageIO.cxx.

References itk::ImageIOBase::GetComponentTypeAsString(), m_BodyPart, m_CompressionType, m_FrameOfReferenceInstanceUID, m_Institution, m_InternalComponentType, m_KeepOriginalUID, m_LoadPrivateTags, m_LoadSequences, m_Manufacturer, m_MaxSizeLoadEntry, m_Modality, m_Model, m_NumberOfSeriesInStudy, m_NumberOfStudyRelatedSeries, m_PatientAge, m_PatientDOB, m_PatientID, m_PatientName, m_PatientSex, m_RescaleIntercept, m_RescaleSlope, m_ScanOptions, m_SeriesInstanceUID, m_StudyDate, m_StudyDescription, m_StudyID, m_StudyInstanceUID, m_UIDPrefix, and itk::ImageIOBase::PrintSelf().

void itk::LightObject::PrintTrailer	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtualinherited

Define a default print trailer for all objects.

Definition at line 331 of file itkLightObject.cxx.

void itk::GDCMImageIO::Read ( void * buffer )

virtual

Reads the data from disk into the memory buffer provided.

Implements itk::ImageIOBase.

Definition at line 603 of file itkGDCMImageIO.cxx.

References itk::ImageIOBase::CHAR, itk::ImageIOBase::DOUBLE, itk::ImageIOBase::FLOAT, itk::ImageIOBase::INT, itk::ImageIOBase::m_ComponentType, m_DICOMHeader, itk::ImageIOBase::m_FileName, itk::InternalHeader::m_Header, m_InternalComponentType, itk::ImageIOBase::m_NumberOfComponents, m_RescaleIntercept, m_RescaleSlope, itk::RescaleFunction(), itk::ImageIOBase::SHORT, itk::ImageIOBase::UCHAR, itk::ImageIOBase::UINT, and itk::ImageIOBase::USHORT.

void itk::ImageIOBase::ReadBufferAsASCII	(	std::istream &	os,
		void *	buffer,
		IOComponentType	ctype,
		ImageIOBase::SizeType	numComp
	)

protectedinherited

Convenient method to read a buffer as ASCII text.

Definition at line 981 of file itkImageIOBase.cxx.

References itk::ImageIOBase::CDOUBLE, itk::ImageIOBase::CFLOAT, itk::ImageIOBase::CHAR, itk::ImageIOBase::CINT, itk::ImageIOBase::CSHORT, itk::ImageIOBase::DOUBLE, itk::ImageIOBase::FLOAT, itk::ImageIOBase::INT, itk::ImageIOBase::LONG, itk::ReadBuffer(), itk::ImageIOBase::SHORT, itk::ImageIOBase::UCHAR, itk::ImageIOBase::UINT, itk::ImageIOBase::ULONG, and itk::ImageIOBase::USHORT.

Referenced by itk::VTKImageIO::Read(), and itk::VTKImageIO2::Read().

bool itk::ImageIOBase::ReadBufferAsBinary	(	std::istream &	os,
		void *	buffer,
		ImageIOBase::SizeType	num
	)

protectedinherited

Convenient method to read a buffer as binary. Return true on success.

Definition at line 645 of file itkImageIOBase.cxx.

Referenced by itk::AnalyzeImageIO::CanReadFile(), itk::BioRadImageIO::Read(), itk::StimulateImageIO::Read(), itk::IPLCommonImageIO::Read(), and itk::AnalyzeImageIO::ReadImageInformation().

void itk::GDCMImageIO::ReadImageInformation ( void )

virtual

Set the spacing and dimesion information for the current filename.

Implements itk::ImageIOBase.

Definition at line 1268 of file itkGDCMImageIO.cxx.

References InternalReadImageInformation().

void itk::Object::Register ( ) const

virtualinherited

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

Definition at line 309 of file itkObject.cxx.

Referenced by itk::ObjectFactoryBase::RegisterFactory().

void itk::Object::RemoveAllObservers ( )

inherited

Remove all observers .

Definition at line 435 of file itkObject.cxx.

void itk::Object::RemoveObserver ( unsigned long tag )

inherited

Remove the observer with this tag value.

Definition at line 425 of file itkObject.cxx.

Referenced by otb::StreamingImageVirtualWriter< TInputImage >::GenerateData(), and otb::ImageFileWriter< TInputImage >::Update().

void itk::ImageIOBase::Reset ( const bool freeDynamic = true )

protectedvirtualinherited

Return the object to an initialized state, ready to be used

Definition at line 46 of file itkImageIOBase.cxx.

References itk::ImageIOBase::m_Dimensions, itk::ImageIOBase::m_FileName, itk::ImageIOBase::m_Initialized, itk::ImageIOBase::m_NumberOfComponents, itk::ImageIOBase::m_NumberOfDimensions, itk::ImageIOBase::m_Strides, itk::ImageIOBase::m_UseCompression, itk::ImageIOBase::m_UseStreamedReading, and itk::ImageIOBase::m_UseStreamedWriting.

Referenced by itk::ImageIOBase::ImageIOBase().

void itk::ImageIOBase::Resize	(	const unsigned int	numDimensions,
		const unsigned int *	dimensions
	)

protectedinherited

Resize the ImageIOBase object to new dimensions.

Definition at line 88 of file itkImageIOBase.cxx.

References itk::ImageIOBase::ComputeStrides(), itk::ImageIOBase::m_Dimensions, itk::ImageIOBase::m_NumberOfDimensions, and NULL.

virtual void itk::LightProcessObject::SetAbortGenerateData ( bool _arg )

virtualinherited

Set the AbortGenerateData flag for the process object. Process objects may handle premature termination of execution in different ways.

virtual void itk::ImageIOBase::SetByteOrder ( const ByteOrder _arg )

virtualinherited

These methods indicate the byte ordering of the file you are trying to read in. These methods will then either swap or not swap the bytes depending on the byte ordering of the machine it is being run on. For example, reading in a BigEndian file on a BigEndian machine will result in no swapping. Trying to read the same file on a LittleEndian machine will result in swapping. Note: most UNIX machines are BigEndian while PC's and VAX's are LittleEndian. So if the file you are reading in was generated on a VAX or PC, SetByteOrderToLittleEndian() otherwise SetByteOrderToBigEndian(). Some ImageIOBase subclasses ignore these methods.

Referenced by itk::NrrdImageIO::ReadImageInformation().

void itk::ImageIOBase::SetByteOrderToBigEndian ( )

inlineinherited

Definition at line 235 of file itkImageIOBase.h.

Referenced by itk::NrrdImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), and itk::MRCImageIO::ReadImageInformation().

void itk::ImageIOBase::SetByteOrderToLittleEndian ( )

inlineinherited

Definition at line 239 of file itkImageIOBase.h.

Referenced by itk::NrrdImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), and itk::MRCImageIO::ReadImageInformation().

virtual void itk::ImageIOBase::SetComponentType ( const IOComponentType _arg )

virtualinherited

Set/Get the component type of the image. This is always a native type.

virtual void itk::GDCMImageIO::SetCompressionType ( const TCompressionType _arg )

virtual

void itk::Object::SetDebug ( bool debugFlag ) const

inherited

Set the value of the debug flag. A non-zero value turns debugging on.

Definition at line 275 of file itkObject.cxx.

void itk::ImageIOBase::SetDimensions	(	unsigned int	i,
		unsigned int	dim
	)

virtualinherited

Set/Get the image dimensions in the x, y, z, etc. directions. GetDimensions() is typically used after reading the data; the SetDimensions() is used prior to writing the data.

Definition at line 102 of file itkImageIOBase.cxx.

References itk::ImageIOBase::m_Dimensions, and itk::Object::Modified().

Referenced by itk::VTKImageIO2::InternalReadImageInformation(), itk::DICOMImageIO2::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::MINC2ImageIO::ReadImageInformation(), itk::IPLCommonImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), and itk::Bruker2DSEQImageIO::ReadImageInformation().

void itk::ImageIOBase::SetDirection	(	unsigned int	i,
		std::vector< double > &	direction
	)

virtualinherited

Set/Get the image direction on an axis-by-axis basis. The SetDirection() method is required when writing the image.

Definition at line 147 of file itkImageIOBase.cxx.

References itk::ImageIOBase::m_Direction, and itk::Object::Modified().

void itk::ImageIOBase::SetDirection	(	unsigned int	i,
		vnl_vector< double > &	direction
	)

virtualinherited

Definition at line 162 of file itkImageIOBase.cxx.

References itk::ImageIOBase::m_Direction, and itk::Object::Modified().

virtual void itk::ImageIOBase::SetFileName ( const char * _arg )

virtualinherited

Set/Get the name of the file to be read.

Referenced by itk::SiemensVisionImageIO::CanReadFile().

virtual void itk::ImageIOBase::SetFileType ( const FileType _arg )

virtualinherited

These methods control whether the file is written binary or ASCII. Many file formats (i.e., subclasses) ignore this flag.

Referenced by itk::MetaImageIO::ReadImageInformation().

void itk::ImageIOBase::SetFileTypeToASCII ( )

inlineinherited

Definition at line 213 of file itkImageIOBase.h.

Referenced by itk::VTKImageIO::InternalReadImageInformation(), itk::VTKImageIO2::InternalReadImageInformation(), and itk::NrrdImageIO::ReadImageInformation().

void itk::ImageIOBase::SetFileTypeToBinary ( )

inlineinherited

Definition at line 217 of file itkImageIOBase.h.

Referenced by itk::VTKImageIO::InternalReadImageInformation(), itk::VTKImageIO2::InternalReadImageInformation(), itk::MRCImageIO::MRCImageIO(), and itk::NrrdImageIO::ReadImageInformation().

void itk::Object::SetGlobalWarningDisplay ( bool val )

staticinherited

This is a global flag that controls whether any debug, warning or error messages are displayed.

Set the value of the global debug output control flag.

Definition at line 370 of file itkObject.cxx.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

virtual void itk::ImageIOBase::SetIORegion ( ImageIORegion _arg )

virtualinherited

Specify the region of the image data to either read or write. The IORegion specifies the part of the image to read or write. Regions are defined with an index and a size vector. These vectors define the start (lower-left corner) and length of the region within the image. Make sure that the IORegion lies within the image.

virtual void itk::GDCMImageIO::SetKeepOriginalUID ( bool _arg )

virtual

Preserve the original DICOM UID of the input files

virtual void itk::GDCMImageIO::SetLoadPrivateTags ( bool _arg )

virtual

Parse any private tags in the DICOM file. Defaults to the value of LoadPrivateTagsDefault. Loading DICOM files is faster when private tags are not needed.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

static void itk::GDCMImageIO::SetLoadPrivateTagsDefault ( bool b )

inlinestatic

Global method to define the default value for LoadPrivateTags. When instances of GDCMImageIO are created, the ivar LoadPrivateTags is initialized to the value of LoadPrivateTagsDefault. This method is useful when relying on the IO factory mechanism to load images rather than specifying a particular ImageIO object on the readers. Default is false.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

Definition at line 228 of file itkGDCMImageIO.h.

virtual void itk::GDCMImageIO::SetLoadSequences ( bool _arg )

virtual

Parse any sequences in the DICOM file. Defaults to the value of LoadSequencesDefault. Loading DICOM files is faster when sequences are not needed.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

static void itk::GDCMImageIO::SetLoadSequencesDefault ( bool b )

inlinestatic

Global method to define the default value for LoadSequences. When instances of GDCMImageIO are created, the ivar LoadSequences is initialized to the value of LoadSequencesDefault. This method is useful when relying on the IO factory mechanism to load images rather than specifying a particular ImageIO object on the readers. Default is false.

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

Definition at line 211 of file itkGDCMImageIO.h.

virtual void itk::GDCMImageIO::SetMaxSizeLoadEntry ( long _arg )

virtual

A DICOM file can contains multiple binary stream that can be very long For example an Overlay on the image. Most of the time user do not want to load this binary structure in memory since it can consume lot of memory. Therefore any field that is bigger than the default value 0xfff is discarded and just seek'd This method allow advanced user to force the reading of such field

Warning: this is a GDCM 1.x only option, no effect on GDCM 2.x

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary & rhs )

inherited

Returns: Set the MetaDataDictionary

Definition at line 554 of file itkObject.cxx.

References NULL.

Referenced by otb::VectorImage< TPixel, VImageDimension >::CopyInformation(), and otb::Image< TPixel, VImageDimension >::CopyInformation().

virtual void itk::ImageIOBase::SetNumberOfComponents ( unsigned int _arg )

virtualinherited

Set/Get the number of components per pixel in the image. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

void itk::ImageIOBase::SetNumberOfDimensions ( unsigned int dim )

inherited

Set/Get the number of independent variables (dimensions) in the image being read or written. Note this is not necessarily what is written, rather the IORegion controls that.

Definition at line 610 of file itkImageIOBase.cxx.

References itk::ImageIOBase::m_Dimensions, itk::ImageIOBase::m_Direction, itk::ImageIOBase::m_NumberOfDimensions, itk::ImageIOBase::m_Origin, itk::ImageIOBase::m_Spacing, itk::ImageIOBase::m_Strides, itk::Object::Modified(), itk::ImageIOBase::SetDirection(), itk::ImageIOBase::SetOrigin(), and itk::ImageIOBase::SetSpacing().

void itk::ImageIOBase::SetOrigin	(	unsigned int	i,
		double	origin
	)

virtualinherited

Set/Get the image origin on a axis-by-axis basis. The SetOrigin() method is required when writing the image.

Definition at line 117 of file itkImageIOBase.cxx.

References itk::ImageIOBase::m_Origin, and itk::Object::Modified().

Referenced by itk::Brains2MaskImageIO::CanReadFile(), itk::VTKImageIO2::InternalReadImageInformation(), itk::GE5ImageIO::ModifyImageInformation(), itk::DICOMImageIO2::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::MINC2ImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), and itk::ImageIOBase::SetNumberOfDimensions().

virtual void itk::ImageIOBase::SetPixelType ( const IOPixelType _arg )

virtualinherited

Set/Get the type of the pixel. The PixelTypes provides context to the IO mechanisms for data conversions. PixelTypes can be SCALAR, RGB, RGBA, VECTOR, COVARIANTVECTOR, POINT, INDEX. If the PIXELTYPE is SCALAR, then the NumberOfComponents should be 1. Anyother of PIXELTYPE will have more than one component.

bool itk::ImageIOBase::SetPixelTypeInfo ( const std::type_info & ptype )

virtualinherited

SetPixelTypeInfo is used by writers to convert from an ITK strongly typed pixel to a ImageIO (weaker) typed pixel. This function sets these PixelType, ComponentType, and NumberOfComponents based on RTTI type_info structure passed in. The function returns false if the pixel type is not supported.

Definition at line 476 of file itkImageIOBase.cxx.

Referenced by itk::RawImageIO< TPixel, VImageDimension >::RawImageIO().

virtual void itk::LightProcessObject::SetProgress ( float _arg )

virtualinherited

Set the execution progress of a process object. The progress is a floating number between (0,1), 0 meaning no progress; 1 meaning the filter has completed execution.

void itk::Object::SetReferenceCount ( int ref )

virtualinherited

Sets the reference count (use with care)

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 347 of file itkObject.cxx.

void itk::ImageIOBase::SetSpacing	(	unsigned int	i,
		double	spacing
	)

virtualinherited

Set/Get the image spacing on an axis-by-axis basis. The SetSpacing() method is required when writing the image.

Definition at line 132 of file itkImageIOBase.cxx.

References itk::ImageIOBase::m_Spacing, and itk::Object::Modified().

Referenced by itk::VTKImageIO2::InternalReadImageInformation(), itk::GE5ImageIO::ModifyImageInformation(), itk::DICOMImageIO2::ReadImageInformation(), itk::NrrdImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::MINC2ImageIO::ReadImageInformation(), itk::IPLCommonImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), and itk::ImageIOBase::SetNumberOfDimensions().

virtual void itk::GDCMImageIO::SetUIDPrefix ( const char * _arg )

virtual

virtual void itk::ImageIOBase::SetUseCompression ( bool _arg )

virtualinherited

Set/Get a boolean to use the compression or not.

virtual void itk::ImageIOBase::SetUseStreamedReading ( bool _arg )

virtualinherited

Set/Get a boolean to use streaming while reading or not.

virtual void itk::ImageIOBase::SetUseStreamedWriting ( bool _arg )

virtualinherited

Set/Get a boolean to use streaming while writing or not.

virtual bool itk::ImageIOBase::SupportsDimension ( unsigned long dim )

inlinevirtualinherited

The different types of ImageIO's can support data of varying dimensionality. For example, some file formats are strictly 2D while others can support 2D, 3D, or even n-D. This method returns true/false as to whether the ImageIO can support the dimension indicated.

Reimplemented in itk::RawImageIO< TPixel, VImageDimension >, itk::MetaImageIO, and itk::NrrdImageIO.

Definition at line 337 of file itkImageIOBase.h.

void itk::Object::UnRegister ( ) const

virtualinherited

Decrease the reference count (release by another object).

If there is a delete method, invoke it.

Reimplemented from itk::LightObject.

Definition at line 324 of file itkObject.cxx.

Referenced by itk::Object::New(), and itk::ObjectFactoryBase::UnRegisterFactory().

void itk::LightProcessObject::UpdateOutputData ( void )

virtualinherited

Actually generate new output.

GenerateData this object - we have not aborted yet, and our progress before we start to execute is 0.0.

If we ended due to aborting, push the progress up to 1.0 (since it probably didn't end there)

Definition at line 77 of file itkLightProcessObject.cxx.

void itk::LightProcessObject::UpdateProgress ( float amount )

inherited

Update the progress of the process object. If a ProgressMethod exists, executes it. Then set the Progress ivar to amount. The parameter amount should range between (0,1).

Definition at line 51 of file itkLightProcessObject.cxx.

virtual void itk::ImageIOBase::UseCompressionOff ( )

virtualinherited

virtual void itk::ImageIOBase::UseCompressionOn ( )

virtualinherited

virtual void itk::ImageIOBase::UseStreamedReadingOff ( )

virtualinherited

virtual void itk::ImageIOBase::UseStreamedReadingOn ( )

virtualinherited

virtual void itk::ImageIOBase::UseStreamedWritingOff ( )

virtualinherited

virtual void itk::ImageIOBase::UseStreamedWritingOn ( )

virtualinherited

void itk::GDCMImageIO::Write ( const void * buffer )

virtual

Writes the data to disk from the memory buffer provided. Make sure that the IORegion has been set properly.

Implements itk::ImageIOBase.

Definition at line 1321 of file itkGDCMImageIO.cxx.

void itk::ImageIOBase::WriteBufferAsASCII	(	std::ostream &	os,
		const void *	buffer,
		IOComponentType	ctype,
		ImageIOBase::SizeType	numComp
	)

protectedinherited

Convenient method to write a buffer as ASCII text.

Definition at line 843 of file itkImageIOBase.cxx.

References itk::ImageIOBase::CDOUBLE, itk::ImageIOBase::CFLOAT, itk::ImageIOBase::CHAR, itk::ImageIOBase::CINT, itk::ImageIOBase::CSHORT, itk::ImageIOBase::DOUBLE, itk::ImageIOBase::FLOAT, itk::ImageIOBase::INT, itk::ImageIOBase::LONG, itk::ImageIOBase::SHORT, itk::ImageIOBase::UCHAR, itk::ImageIOBase::UINT, itk::ImageIOBase::ULONG, and itk::ImageIOBase::USHORT.

Referenced by itk::VTKImageIO::Write(), and itk::VTKImageIO2::Write().

void itk::GDCMImageIO::WriteImageInformation ( void )

virtual

Writes the spacing and dimentions of the image. Assumes SetFileName has been called with a valid file name.

Implements itk::ImageIOBase.

Definition at line 1316 of file itkGDCMImageIO.cxx.

Member Data Documentation

std::string itk::GDCMImageIO::m_BodyPart

private

Definition at line 270 of file itkGDCMImageIO.h.

Referenced by GetBodyPart(), and PrintSelf().

ByteOrder itk::ImageIOBase::m_ByteOrder

protectedinherited

Big or Little Endian, and the type of the file. (May be ignored.)

Definition at line 416 of file itkImageIOBase.h.

Referenced by itk::AnalyzeImageIO::AnalyzeImageIO(), itk::BioRadImageIO::BioRadImageIO(), itk::BMPImageIO::BMPImageIO(), itk::Bruker2DSEQImageIO::Bruker2DSEQImageIO(), itk::GiplImageIO::CanReadFile(), itk::Brains2MaskImageIO::CanReadFile(), itk::AnalyzeImageIO::CanReadFile(), itk::DICOMImageIO2::DICOMImageIO2(), GDCMImageIO(), itk::GiplImageIO::GiplImageIO(), itk::LSMImageIO::LSMImageIO(), itk::MetaImageIO::MetaImageIO(), itk::PhilipsRECImageIO::PhilipsRECImageIO(), itk::ImageIOBase::PrintSelf(), itk::RawImageIO< TPixel, VImageDimension >::RawImageIO(), itk::GiplImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), itk::StimulateImageIO::StimulateImageIO(), itk::PhilipsRECImageIO::SwapBytesIfNecessary(), itk::AnalyzeImageIO::SwapBytesIfNecessary(), itk::Bruker2DSEQImageIO::SwapBytesIfNecessary(), itk::AnalyzeImageIO::SwapHeaderBytesIfNecessary(), itk::VoxBoCUBImageIO::VoxBoCUBImageIO(), itk::VTKImageIO::VTKImageIO(), and itk::VTKImageIO2::VTKImageIO2().

IOComponentType itk::ImageIOBase::m_ComponentType

protectedinherited

Used internally to keep track of the type of the component. It is set when ComputeStrides() is invoked.

Definition at line 413 of file itkImageIOBase.h.

TCompressionType itk::GDCMImageIO::m_CompressionType

private

Definition at line 290 of file itkGDCMImageIO.h.

Referenced by GDCMImageIO(), PrintSelf(), and Write().

InternalHeader* itk::GDCMImageIO::m_DICOMHeader

private

Definition at line 293 of file itkGDCMImageIO.h.

Referenced by GDCMImageIO(), InternalReadImageInformation(), Read(), and ~GDCMImageIO().

std::vector< SizeValueType > itk::ImageIOBase::m_Dimensions

protectedinherited

The array which stores the number of pixels in the x, y, z directions.

Definition at line 446 of file itkImageIOBase.h.

Referenced by itk::Brains2MaskImageIO::CanReadFile(), itk::ImageIOBase::ComputeStrides(), itk::LSMImageIO::FillZeissStruct(), itk::StreamingImageIOBase::GenerateStreamableReadRegionFromRequestedRegion(), itk::BioRadImageIO::InternalReadImageInformation(), itk::VTKImageIO::InternalReadImageInformation(), itk::StimulateImageIO::InternalReadImageInformation(), InternalReadImageInformation(), itk::TIFFImageIO::InternalWrite(), itk::ImageIOBase::PrintSelf(), itk::BMPImageIO::Read(), itk::GiplImageIO::Read(), itk::PhilipsRECImageIO::Read(), itk::Bruker2DSEQImageIO::Read(), itk::TIFFImageIO::ReadImageInformation(), itk::BMPImageIO::ReadImageInformation(), itk::GiplImageIO::ReadImageInformation(), itk::PNGImageIO::ReadImageInformation(), itk::JPEGImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), itk::MRCImageIO::ReadImageInformation(), itk::ImageIOBase::Reset(), itk::ImageIOBase::Resize(), itk::ImageIOBase::SetDimensions(), itk::ImageIOBase::SetNumberOfDimensions(), itk::MRCImageIO::UpdateHeaderFromImageIO(), itk::LSMImageIO::Write(), itk::BioRadImageIO::Write(), itk::StimulateImageIO::Write(), Write(), and itk::JPEGImageIO::WriteSlice().

std::vector<std::vector<double> > itk::ImageIOBase::m_Direction

protectedinherited

The arrays which store the direction cosines of the image.

Definition at line 456 of file itkImageIOBase.h.

Referenced by InternalReadImageInformation(), itk::ImageIOBase::SetDirection(), itk::ImageIOBase::SetNumberOfDimensions(), itk::MINC2ImageIO::Write(), and Write().

std::string itk::ImageIOBase::m_FileName

protectedinherited

Filename to read

Definition at line 423 of file itkImageIOBase.h.

FileType itk::ImageIOBase::m_FileType

protectedinherited

Definition at line 417 of file itkImageIOBase.h.

Referenced by itk::BioRadImageIO::BioRadImageIO(), GDCMImageIO(), itk::LSMImageIO::LSMImageIO(), itk::MetaImageIO::MetaImageIO(), itk::ImageIOBase::PrintSelf(), itk::RawImageIO< TPixel, VImageDimension >::RawImageIO(), itk::VTKImageIO::Read(), itk::VTKImageIO2::Read(), itk::StimulateImageIO::StimulateImageIO(), itk::VTKImageIO::VTKImageIO(), itk::VTKImageIO2::VTKImageIO2(), itk::VTKImageIO::Write(), and itk::VTKImageIO2::Write().

std::string itk::GDCMImageIO::m_FrameOfReferenceInstanceUID

protected

Definition at line 257 of file itkGDCMImageIO.h.

Referenced by GDCMImageIO(), PrintSelf(), and Write().

unsigned int itk::GDCMImageIO::m_GlobalNumberOfDimensions

private

defines whether this image is a 2D out of a 2D image or a 2D out of a 3D image.

Definition at line 289 of file itkGDCMImageIO.h.

Referenced by GDCMImageIO(), and Write().

bool itk::ImageIOBase::m_Initialized

protectedinherited

Does the ImageIOBase object have enough info to be of use?

Definition at line 420 of file itkImageIOBase.h.

Referenced by itk::ImageIOBase::Reset().

std::string itk::GDCMImageIO::m_Institution

private

Definition at line 278 of file itkGDCMImageIO.h.

Referenced by GetInstitution(), and PrintSelf().

ImageIOBase::IOComponentType itk::GDCMImageIO::m_InternalComponentType

private

Definition at line 292 of file itkGDCMImageIO.h.

Referenced by GDCMImageIO(), InternalReadImageInformation(), PrintSelf(), Read(), and Write().

ImageIORegion itk::ImageIOBase::m_IORegion

protectedinherited

The region to read or write. The region contains information about the data within the region to read or write.

Definition at line 443 of file itkImageIOBase.h.

Referenced by itk::ImageIOBase::PrintSelf(), itk::MetaImageIO::Read(), and itk::StreamingImageIOBase::StreamWriteBufferAsBinary().

bool itk::GDCMImageIO::m_KeepOriginalUID

protected

Definition at line 258 of file itkGDCMImageIO.h.

Referenced by GDCMImageIO(), PrintSelf(), and Write().

bool itk::GDCMImageIO::m_LoadPrivateTags

private

Definition at line 283 of file itkGDCMImageIO.h.

Referenced by InternalReadImageInformation(), and PrintSelf().

bool itk::GDCMImageIO::m_LoadPrivateTagsDefault = true

staticprivate

Definition at line 285 of file itkGDCMImageIO.h.

bool itk::GDCMImageIO::m_LoadSequences

private

Definition at line 282 of file itkGDCMImageIO.h.

Referenced by InternalReadImageInformation(), and PrintSelf().

bool itk::GDCMImageIO::m_LoadSequencesDefault = true

staticprivate

Definition at line 284 of file itkGDCMImageIO.h.

std::string itk::GDCMImageIO::m_Manufacturer

private

Definition at line 277 of file itkGDCMImageIO.h.

Referenced by GetManufacturer(), and PrintSelf().

long itk::GDCMImageIO::m_MaxSizeLoadEntry

protected

Definition at line 259 of file itkGDCMImageIO.h.

Referenced by GDCMImageIO(), InternalReadImageInformation(), and PrintSelf().

std::string itk::GDCMImageIO::m_Modality

private

Definition at line 276 of file itkGDCMImageIO.h.

Referenced by GetModality(), and PrintSelf().

std::string itk::GDCMImageIO::m_Model

private

Definition at line 279 of file itkGDCMImageIO.h.

Referenced by GetModel(), and PrintSelf().

unsigned int itk::ImageIOBase::m_NumberOfComponents

protectedinherited

Stores the number of components per pixel. This will be 1 for grayscale images, 3 for RGBPixel images, and 4 for RGBPixelA images.

Definition at line 427 of file itkImageIOBase.h.

Referenced by itk::BioRadImageIO::BioRadImageIO(), itk::ImageIOBase::ComputeStrides(), itk::LSMImageIO::FillZeissStruct(), itk::ImageIOBase::PrintSelf(), Read(), itk::MetaImageIO::ReadImageInformation(), itk::ImageIOBase::Reset(), and Write().

unsigned int itk::ImageIOBase::m_NumberOfDimensions

protectedinherited

The number of independent dimensions in the image.

Definition at line 430 of file itkImageIOBase.h.

Referenced by itk::ImageIOBase::ComputeStrides(), itk::LSMImageIO::FillZeissStruct(), itk::StreamingImageIOBase::GenerateStreamableReadRegionFromRequestedRegion(), itk::VTKImageIO::InternalReadImageInformation(), itk::BioRadImageIO::InternalReadImageInformation(), itk::VTKImageIO2::InternalReadImageInformation(), itk::StimulateImageIO::InternalReadImageInformation(), itk::TIFFImageIO::InternalWrite(), itk::DICOMImageIO2::PrintSelf(), itk::ImageIOBase::PrintSelf(), itk::LSMImageIO::ReadImageInformation(), itk::MetaImageIO::ReadImageInformation(), itk::ImageIOBase::Reset(), itk::ImageIOBase::Resize(), itk::ImageIOBase::SetNumberOfDimensions(), itk::LSMImageIO::Write(), itk::BioRadImageIO::Write(), itk::TIFFImageIO::Write(), itk::StimulateImageIO::Write(), Write(), and itk::PNGImageIO::WriteSlice().

std::string itk::GDCMImageIO::m_NumberOfSeriesInStudy

private

Definition at line 271 of file itkGDCMImageIO.h.

Referenced by GetNumberOfSeriesInStudy(), and PrintSelf().

std::string itk::GDCMImageIO::m_NumberOfStudyRelatedSeries

private

Definition at line 272 of file itkGDCMImageIO.h.

Referenced by GetNumberOfStudyRelatedSeries(), and PrintSelf().

std::vector<double> itk::ImageIOBase::m_Origin

protectedinherited

The array which stores the origin of the image.

Definition at line 453 of file itkImageIOBase.h.

std::string itk::GDCMImageIO::m_PatientAge

private

Definition at line 274 of file itkGDCMImageIO.h.

Referenced by GetPatientAge(), and PrintSelf().

std::string itk::GDCMImageIO::m_PatientDOB

private

Definition at line 267 of file itkGDCMImageIO.h.

Referenced by GetPatientDOB(), and PrintSelf().

std::string itk::GDCMImageIO::m_PatientID

private

Definition at line 266 of file itkGDCMImageIO.h.

Referenced by GetPatientID(), and PrintSelf().

std::string itk::GDCMImageIO::m_PatientName

private

Definition at line 265 of file itkGDCMImageIO.h.

Referenced by GetPatientName(), and PrintSelf().

std::string itk::GDCMImageIO::m_PatientSex

private

Definition at line 273 of file itkGDCMImageIO.h.

Referenced by GetPatientSex(), and PrintSelf().

IOPixelType itk::ImageIOBase::m_PixelType

protectedinherited

Used internally to keep track of the type of the pixel.

Definition at line 409 of file itkImageIOBase.h.

Referenced by itk::AnalyzeImageIO::AnalyzeImageIO(), itk::BioRadImageIO::BioRadImageIO(), itk::BMPImageIO::BMPImageIO(), itk::Brains2MaskImageIO::Brains2MaskImageIO(), itk::Bruker2DSEQImageIO::Bruker2DSEQImageIO(), itk::DICOMImageIO2::DICOMImageIO2(), itk::ImageIOBase::GetPixelSize(), itk::JPEGImageIO::JPEGImageIO(), itk::PhilipsRECImageIO::PhilipsRECImageIO(), itk::PNGImageIO::PNGImageIO(), itk::GiplImageIO::PrintSelf(), itk::VoxBoCUBImageIO::PrintSelf(), itk::ImageIOBase::PrintSelf(), itk::NrrdImageIO::Read(), itk::BMPImageIO::ReadImageInformation(), itk::GiplImageIO::ReadImageInformation(), itk::PNGImageIO::ReadImageInformation(), itk::JPEGImageIO::ReadImageInformation(), itk::VoxBoCUBImageIO::ReadImageInformation(), itk::PhilipsRECImageIO::ReadImageInformation(), itk::AnalyzeImageIO::ReadImageInformation(), itk::Bruker2DSEQImageIO::ReadImageInformation(), and itk::TIFFImageIO::TIFFImageIO().

InternalReferenceCountType itk::LightObject::m_ReferenceCount

mutableprotectedinherited

Number of uses of this object by other objects.

Definition at line 141 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock

mutableprotectedinherited

Mutex lock to protect modification to the reference count

Definition at line 144 of file itkLightObject.h.

double itk::GDCMImageIO::m_RescaleIntercept

protected

Definition at line 252 of file itkGDCMImageIO.h.

Referenced by GDCMImageIO(), InternalReadImageInformation(), PrintSelf(), Read(), and Write().

double itk::GDCMImageIO::m_RescaleSlope

protected

Definition at line 251 of file itkGDCMImageIO.h.

Referenced by GDCMImageIO(), InternalReadImageInformation(), PrintSelf(), Read(), and Write().

std::string itk::GDCMImageIO::m_ScanOptions

private

Definition at line 280 of file itkGDCMImageIO.h.

Referenced by GetScanOptions(), and PrintSelf().

std::string itk::GDCMImageIO::m_SeriesInstanceUID

protected

Definition at line 256 of file itkGDCMImageIO.h.

Referenced by GDCMImageIO(), PrintSelf(), and Write().

std::vector<double> itk::ImageIOBase::m_Spacing

protectedinherited

The array which stores the spacing of pixels in the x, y, z directions.

Definition at line 450 of file itkImageIOBase.h.

std::vector< SizeType > itk::ImageIOBase::m_Strides

protectedinherited

Stores the number of bytes it takes to get to the next 'thing' e.g. component, pixel, row, slice, etc.

Definition at line 460 of file itkImageIOBase.h.

Referenced by itk::ImageIOBase::ComputeStrides(), itk::ImageIOBase::Reset(), itk::ImageIOBase::SetNumberOfDimensions(), and itk::MINC2ImageIO::Write().

std::string itk::GDCMImageIO::m_StudyDate

private

Definition at line 275 of file itkGDCMImageIO.h.

Referenced by GetStudyDate(), and PrintSelf().

std::string itk::GDCMImageIO::m_StudyDescription

private

Definition at line 269 of file itkGDCMImageIO.h.

Referenced by GetStudyDescription(), and PrintSelf().

std::string itk::GDCMImageIO::m_StudyID

private

Definition at line 268 of file itkGDCMImageIO.h.

Referenced by GetStudyID(), and PrintSelf().

std::string itk::GDCMImageIO::m_StudyInstanceUID

protected

Definition at line 255 of file itkGDCMImageIO.h.

Referenced by GDCMImageIO(), PrintSelf(), and Write().

std::string itk::GDCMImageIO::m_UIDPrefix

protected

Definition at line 254 of file itkGDCMImageIO.h.

Referenced by GDCMImageIO(), PrintSelf(), and Write().

bool itk::ImageIOBase::m_UseCompression

protectedinherited

Should we compress the data?

Definition at line 433 of file itkImageIOBase.h.

Referenced by itk::TIFFImageIO::InternalWrite(), itk::JPEGImageIO::JPEGImageIO(), itk::PNGImageIO::PNGImageIO(), itk::ImageIOBase::PrintSelf(), itk::ImageIOBase::Reset(), itk::LSMImageIO::Write(), Write(), and itk::PNGImageIO::WriteSlice().

bool itk::ImageIOBase::m_UseStreamedReading

protectedinherited

Should we use streaming for reading

Definition at line 436 of file itkImageIOBase.h.

Referenced by itk::StreamingImageIOBase::GenerateStreamableReadRegionFromRequestedRegion(), itk::ImageIOBase::PrintSelf(), and itk::ImageIOBase::Reset().

bool itk::ImageIOBase::m_UseStreamedWriting

protectedinherited

Should we use streaming for writing

Definition at line 439 of file itkImageIOBase.h.

Referenced by itk::ImageIOBase::PrintSelf(), and itk::ImageIOBase::Reset().

The documentation for this class was generated from the following files:

Public Types

Public Member Functions

Static Public Member Functions

Protected Types

Protected Member Functions

Protected Attributes

Private Member Functions

Private Attributes

Static Private Attributes

Detailed Description

Member Typedef Documentation

Member Enumeration Documentation

Constructor & Destructor Documentation

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Member Data Documentation